Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DVH26_RS00515 Genome accession   NZ_CP031168
Coordinates   106869..107822 (+) Length   317 a.a.
NCBI ID   WP_239630657.1    Uniprot ID   -
Organism   Paenibacillus sp. H1-7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101869..112822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVH26_RS00500 (DVH26_00505) - 103919..105262 (+) 1344 WP_239630654.1 extracellular solute-binding protein -
  DVH26_RS00505 (DVH26_00510) - 105289..106017 (+) 729 WP_239630655.1 glycerophosphodiester phosphodiesterase -
  DVH26_RS00510 (DVH26_00515) - 106289..106858 (+) 570 WP_239630656.1 nitroreductase -
  DVH26_RS00515 (DVH26_00520) ceuB 106869..107822 (+) 954 WP_239630657.1 ABC transporter permease Machinery gene
  DVH26_RS00520 (DVH26_00525) - 107812..108759 (+) 948 WP_239630658.1 iron chelate uptake ABC transporter family permease subunit -
  DVH26_RS00525 (DVH26_00530) - 108756..109514 (+) 759 WP_239630659.1 ABC transporter ATP-binding protein -
  DVH26_RS00530 (DVH26_00535) - 109615..110607 (+) 993 WP_239630660.1 siderophore ABC transporter substrate-binding protein -
  DVH26_RS00535 (DVH26_00540) - 110686..111402 (-) 717 WP_239630661.1 DUF6022 family protein -
  DVH26_RS00540 (DVH26_00545) - 111499..112209 (+) 711 WP_239630662.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35145.54 Da        Isoelectric Point: 10.0619

>NTDB_id=303847 DVH26_RS00515 WP_239630657.1 106869..107822(+) (ceuB) [Paenibacillus sp. H1-7]
MKLRYLVVLLIVLSIASIFIGVKEIKPWELFKLTEDQLQVLFISRFPRLISIIIAGVSMGVVGLIMQQLSRNKFVSPTTG
GTDDSARLGILVSLLLFTSATPMQKMLVAFVFALLGTFVFMKILDKVKYKDAIFIPLVGLMFGGIISSFSTFFAYKYDLI
QNLSSWLQGNFALTMKGRYELLYLSIPVVIIAYLYANKFTIAGMGEEFSVNLGLNYKKVVNLGLVIVALVSSVVMLTVGT
IPFLGLIIPNIVTLYHGDNLKKNLPHTALLGAVFVMFCDILGRVIIYPFEIPIGLTVGVLGSGIFLYLLLRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=303847 DVH26_RS00515 WP_239630657.1 106869..107822(+) (ceuB) [Paenibacillus sp. H1-7]
GTGAAATTAAGATATTTGGTTGTCCTGCTTATCGTGCTATCGATCGCCTCTATATTCATAGGGGTCAAAGAGATCAAACC
GTGGGAGCTGTTCAAGCTGACCGAAGACCAGCTGCAGGTGCTGTTCATCAGCCGCTTCCCGCGCTTGATCAGCATCATTA
TTGCCGGCGTCAGCATGGGCGTCGTCGGACTGATCATGCAGCAGCTCAGCCGCAACAAGTTCGTTTCTCCTACGACGGGA
GGCACCGACGATTCCGCCCGTTTGGGCATTCTCGTTTCGCTGCTGCTGTTCACCTCCGCGACGCCGATGCAGAAGATGCT
GGTCGCTTTCGTGTTCGCTCTGCTCGGCACGTTTGTCTTTATGAAAATTCTCGACAAGGTGAAATATAAAGATGCCATTT
TTATCCCGCTCGTCGGGTTGATGTTCGGAGGCATCATTTCATCGTTCTCCACCTTTTTTGCTTACAAGTACGATTTGATT
CAAAATCTTTCGTCCTGGCTGCAGGGGAATTTCGCTCTGACGATGAAAGGCCGCTATGAGCTGCTGTACTTGAGCATACC
GGTCGTTATTATCGCCTATTTGTATGCCAACAAATTTACGATTGCCGGGATGGGGGAGGAGTTCTCCGTCAACCTCGGGC
TGAATTACAAAAAAGTCGTCAACCTTGGTCTCGTCATCGTAGCTCTTGTATCCTCCGTCGTGATGCTGACGGTAGGGACG
ATTCCTTTTCTCGGGCTGATCATCCCTAATATCGTCACCTTGTACCACGGCGATAATTTGAAGAAAAACCTTCCGCATAC
CGCCTTGCTGGGGGCTGTATTCGTCATGTTCTGCGATATTTTGGGCCGGGTGATCATCTACCCGTTCGAAATTCCAATCG
GCCTAACGGTCGGAGTGCTCGGAAGCGGTATTTTTCTTTACTTACTGTTGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.968

99.369

0.536

Multiple sequence alignment