Detailed information
Bioinformatically predicted
Overview
| Name | ddrB | Type | Machinery gene |
| Locus tag | DVJ83_RS11485 | Genome accession | NZ_CP031158 |
| Coordinates | 2288227..2288787 (+) | Length | 186 a.a. |
| NCBI ID | WP_162865542.1 | Uniprot ID | - |
| Organism | Deinococcus wulumuqiensis strain NEB 479 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2283227..2293787
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVJ83_RS11455 (DVJ83_11450) | - | 2284415..2284861 (+) | 447 | WP_114672874.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| DVJ83_RS11460 (DVJ83_11455) | - | 2284951..2285376 (+) | 426 | WP_114672428.1 | DoxX family protein | - |
| DVJ83_RS11465 (DVJ83_11460) | - | 2285584..2286375 (-) | 792 | WP_162865541.1 | APH(3') family aminoglycoside O-phosphotransferase | - |
| DVJ83_RS11470 (DVJ83_11465) | - | 2286415..2287320 (+) | 906 | WP_114672430.1 | hypothetical protein | - |
| DVJ83_RS11475 (DVJ83_11470) | - | 2287317..2287685 (+) | 369 | WP_114672431.1 | hypothetical protein | - |
| DVJ83_RS11480 (DVJ83_11475) | - | 2287754..2288128 (+) | 375 | WP_017870769.1 | hypothetical protein | - |
| DVJ83_RS11485 (DVJ83_11480) | ddrB | 2288227..2288787 (+) | 561 | WP_162865542.1 | single-stranded DNA-binding protein DdrB | Machinery gene |
| DVJ83_RS11495 (DVJ83_11490) | - | 2289023..2290897 (-) | 1875 | WP_114672434.1 | peptidylprolyl isomerase | - |
| DVJ83_RS11505 (DVJ83_11500) | - | 2291297..2291782 (+) | 486 | WP_017870766.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 186 a.a. Molecular weight: 20763.23 Da Isoelectric Point: 9.2754
>NTDB_id=303814 DVJ83_RS11485 WP_162865542.1 2288227..2288787(+) (ddrB) [Deinococcus wulumuqiensis strain NEB 479]
MLQIEFLTDLGARVTVSVEHESRLLDVQRHYGRLGWTSGEIPSGGYQFPIENEPDFDWSLIGARKWKSPEGEELVIHRGH
AYRRRELEAVDSRKLKLPAAIKYSRGAKVSDPQHVREKADGDIEYVSLAIFRGGKRQERYAVPGGSAASQGRPAPQGQPT
QTRPQAARPASRPPAQQPAQEEEAPF
MLQIEFLTDLGARVTVSVEHESRLLDVQRHYGRLGWTSGEIPSGGYQFPIENEPDFDWSLIGARKWKSPEGEELVIHRGH
AYRRRELEAVDSRKLKLPAAIKYSRGAKVSDPQHVREKADGDIEYVSLAIFRGGKRQERYAVPGGSAASQGRPAPQGQPT
QTRPQAARPASRPPAQQPAQEEEAPF
Nucleotide
Download Length: 561 bp
>NTDB_id=303814 DVJ83_RS11485 WP_162865542.1 2288227..2288787(+) (ddrB) [Deinococcus wulumuqiensis strain NEB 479]
ATGTTGCAGATTGAATTTCTGACCGACCTGGGTGCGCGGGTCACGGTGAGCGTGGAGCACGAGAGTCGGCTGCTGGACGT
GCAACGTCACTATGGTCGTCTGGGGTGGACCAGCGGCGAGATTCCGTCCGGGGGCTACCAGTTTCCCATCGAAAACGAGC
CGGACTTCGACTGGTCGCTGATTGGTGCCCGCAAGTGGAAAAGCCCGGAAGGCGAGGAACTCGTCATTCACCGGGGCCAC
GCCTACCGCCGCCGCGAACTGGAGGCAGTGGACAGCCGCAAGCTCAAGCTGCCTGCCGCCATCAAATACAGCCGGGGCGC
CAAGGTCAGCGACCCGCAGCACGTCCGCGAGAAGGCCGACGGCGACATCGAATATGTCAGCCTCGCCATTTTCCGGGGCG
GTAAGCGCCAGGAGCGCTACGCGGTGCCCGGCGGCTCGGCGGCCAGTCAGGGACGCCCGGCTCCGCAGGGCCAGCCCACT
CAAACCCGGCCCCAGGCGGCCCGTCCCGCCTCCCGGCCCCCCGCTCAGCAGCCCGCACAGGAAGAAGAAGCGCCGTTCTG
A
ATGTTGCAGATTGAATTTCTGACCGACCTGGGTGCGCGGGTCACGGTGAGCGTGGAGCACGAGAGTCGGCTGCTGGACGT
GCAACGTCACTATGGTCGTCTGGGGTGGACCAGCGGCGAGATTCCGTCCGGGGGCTACCAGTTTCCCATCGAAAACGAGC
CGGACTTCGACTGGTCGCTGATTGGTGCCCGCAAGTGGAAAAGCCCGGAAGGCGAGGAACTCGTCATTCACCGGGGCCAC
GCCTACCGCCGCCGCGAACTGGAGGCAGTGGACAGCCGCAAGCTCAAGCTGCCTGCCGCCATCAAATACAGCCGGGGCGC
CAAGGTCAGCGACCCGCAGCACGTCCGCGAGAAGGCCGACGGCGACATCGAATATGTCAGCCTCGCCATTTTCCGGGGCG
GTAAGCGCCAGGAGCGCTACGCGGTGCCCGGCGGCTCGGCGGCCAGTCAGGGACGCCCGGCTCCGCAGGGCCAGCCCACT
CAAACCCGGCCCCAGGCGGCCCGTCCCGCCTCCCGGCCCCCCGCTCAGCAGCCCGCACAGGAAGAAGAAGCGCCGTTCTG
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ddrB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
88.298 |
100 |
0.892 |