Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | DVJ83_RS02065 | Genome accession | NZ_CP031158 |
| Coordinates | 394296..395516 (-) | Length | 406 a.a. |
| NCBI ID | WP_114671207.1 | Uniprot ID | A0A345IEM1 |
| Organism | Deinococcus wulumuqiensis strain NEB 479 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 389296..400516
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVJ83_RS02035 (DVJ83_02035) | - | 389381..390385 (+) | 1005 | WP_114671205.1 | 4Fe-4S binding protein | - |
| DVJ83_RS02040 (DVJ83_02040) | - | 390546..391892 (-) | 1347 | WP_162865320.1 | peptidoglycan D,D-transpeptidase FtsI family protein | - |
| DVJ83_RS02045 (DVJ83_02045) | - | 391883..392248 (-) | 366 | WP_017869611.1 | hypothetical protein | - |
| DVJ83_RS02050 (DVJ83_02050) | rsmH | 392249..393181 (-) | 933 | WP_162865587.1 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH | - |
| DVJ83_RS02055 (DVJ83_02055) | mraZ | 393187..393615 (-) | 429 | WP_017869609.1 | division/cell wall cluster transcriptional repressor MraZ | - |
| DVJ83_RS02060 (DVJ83_02060) | - | 393891..394244 (+) | 354 | WP_017869608.1 | DUF423 domain-containing protein | - |
| DVJ83_RS02065 (DVJ83_02065) | pilC | 394296..395516 (-) | 1221 | WP_114671207.1 | type II secretion system F family protein | Machinery gene |
| DVJ83_RS02070 (DVJ83_02070) | - | 395559..396251 (+) | 693 | WP_114671208.1 | L-threonylcarbamoyladenylate synthase | - |
| DVJ83_RS02075 (DVJ83_02075) | scpB | 396248..396808 (+) | 561 | WP_114671209.1 | SMC-Scp complex subunit ScpB | - |
| DVJ83_RS02080 (DVJ83_02080) | - | 397042..397824 (+) | 783 | WP_114671210.1 | DUF4388 domain-containing protein | - |
| DVJ83_RS02085 (DVJ83_02085) | - | 397932..399155 (-) | 1224 | WP_114671211.1 | transposase | - |
| DVJ83_RS02090 (DVJ83_02090) | - | 399412..400164 (-) | 753 | WP_017869603.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44366.92 Da Isoelectric Point: 7.0326
>NTDB_id=303801 DVJ83_RS02065 WP_114671207.1 394296..395516(-) (pilC) [Deinococcus wulumuqiensis strain NEB 479]
MPAYEYRARDRGGQVLKSQMEAESEAQVRDALRARNLMILDIKAPKTGLNADIKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQLDNKTFENVIKKVRGEVESGVPLSEALQEHPKIFGRLFINLVRAGETSGTLDTVLDRIADFQEKQ
LALQGKIKGALTYPTVVLVFAIGITYFLLTTIVPQFASILTQLNAPLPFITRMLMAVSSFLQNSGLLILAFIAVTVFVYR
WYYRTPKGRYVIDDIKLRMPVFGNLIQKSAISSFARTFGLLISSGVNIIESLEITKGTADNAVVEETIENAKNVVVSGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGTLSQ
MPAYEYRARDRGGQVLKSQMEAESEAQVRDALRARNLMILDIKAPKTGLNADIKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQLDNKTFENVIKKVRGEVESGVPLSEALQEHPKIFGRLFINLVRAGETSGTLDTVLDRIADFQEKQ
LALQGKIKGALTYPTVVLVFAIGITYFLLTTIVPQFASILTQLNAPLPFITRMLMAVSSFLQNSGLLILAFIAVTVFVYR
WYYRTPKGRYVIDDIKLRMPVFGNLIQKSAISSFARTFGLLISSGVNIIESLEITKGTADNAVVEETIENAKNVVVSGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGTLSQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=303801 DVJ83_RS02065 WP_114671207.1 394296..395516(-) (pilC) [Deinococcus wulumuqiensis strain NEB 479]
ATGCCGGCCTACGAATATCGCGCCCGGGACCGGGGAGGACAGGTCCTCAAATCCCAGATGGAGGCCGAGTCCGAAGCCCA
GGTCCGCGACGCGCTCCGGGCCCGCAACCTGATGATTCTGGATATCAAGGCCCCCAAGACGGGCCTGAACGCCGACATCA
AGATTCCGGGACTGACCGACCGCCCGCCGGGCCTCAAGCAGGTGGCGGTGTTCAGCAAGCAGCTCGCCACCCTCATCAAC
GCCGGGGTGCCGCTGGTGCAGTCGCTCGCCATCTTGCAGCGTCAGCTCGACAACAAGACGTTCGAGAACGTCATCAAGAA
GGTGCGCGGCGAGGTCGAATCGGGCGTGCCGCTCAGCGAGGCCCTGCAGGAGCACCCCAAGATTTTCGGGCGCCTGTTCA
TCAACCTCGTCCGCGCCGGGGAAACGAGCGGCACGCTCGACACGGTACTCGACCGCATTGCCGACTTTCAGGAAAAGCAG
CTCGCCCTGCAAGGCAAGATCAAGGGCGCCCTGACCTACCCCACGGTGGTGCTGGTGTTCGCCATCGGCATCACGTACTT
TCTGCTGACCACCATCGTGCCGCAGTTCGCCAGCATCCTGACGCAGCTCAACGCGCCGCTGCCCTTCATCACCCGGATGC
TGATGGCGGTGTCGAGCTTTCTCCAGAATTCCGGCCTGCTGATTCTGGCGTTCATCGCCGTCACCGTCTTCGTCTACCGC
TGGTACTACCGCACGCCGAAGGGCCGCTACGTCATCGACGACATCAAGCTGCGCATGCCGGTGTTCGGAAACCTGATTCA
GAAAAGCGCCATCAGCTCGTTTGCCCGCACCTTCGGGCTGCTCATCAGCAGCGGGGTGAACATCATCGAGTCGCTGGAAA
TCACCAAGGGCACCGCCGACAACGCAGTGGTCGAGGAAACCATCGAGAACGCCAAGAACGTGGTCGTTTCCGGCGACCAG
ATGAGTTCGAGCCTGGCGACGAGCAAGGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGGGAAGAAACCGGGTC
GCTCGACAACATGCTGAACAAGGTCGCCGACTTTTACGACCGCGAGGTGGACGAGGCCGTCGAGAGCCTGACCGCCGCCA
TCGAACCGATGATGATCGTGTTTCTCGGCGGCATCGTCGGCCTGATCGTGGCCGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGCACGCTCAGCCAGTAA
ATGCCGGCCTACGAATATCGCGCCCGGGACCGGGGAGGACAGGTCCTCAAATCCCAGATGGAGGCCGAGTCCGAAGCCCA
GGTCCGCGACGCGCTCCGGGCCCGCAACCTGATGATTCTGGATATCAAGGCCCCCAAGACGGGCCTGAACGCCGACATCA
AGATTCCGGGACTGACCGACCGCCCGCCGGGCCTCAAGCAGGTGGCGGTGTTCAGCAAGCAGCTCGCCACCCTCATCAAC
GCCGGGGTGCCGCTGGTGCAGTCGCTCGCCATCTTGCAGCGTCAGCTCGACAACAAGACGTTCGAGAACGTCATCAAGAA
GGTGCGCGGCGAGGTCGAATCGGGCGTGCCGCTCAGCGAGGCCCTGCAGGAGCACCCCAAGATTTTCGGGCGCCTGTTCA
TCAACCTCGTCCGCGCCGGGGAAACGAGCGGCACGCTCGACACGGTACTCGACCGCATTGCCGACTTTCAGGAAAAGCAG
CTCGCCCTGCAAGGCAAGATCAAGGGCGCCCTGACCTACCCCACGGTGGTGCTGGTGTTCGCCATCGGCATCACGTACTT
TCTGCTGACCACCATCGTGCCGCAGTTCGCCAGCATCCTGACGCAGCTCAACGCGCCGCTGCCCTTCATCACCCGGATGC
TGATGGCGGTGTCGAGCTTTCTCCAGAATTCCGGCCTGCTGATTCTGGCGTTCATCGCCGTCACCGTCTTCGTCTACCGC
TGGTACTACCGCACGCCGAAGGGCCGCTACGTCATCGACGACATCAAGCTGCGCATGCCGGTGTTCGGAAACCTGATTCA
GAAAAGCGCCATCAGCTCGTTTGCCCGCACCTTCGGGCTGCTCATCAGCAGCGGGGTGAACATCATCGAGTCGCTGGAAA
TCACCAAGGGCACCGCCGACAACGCAGTGGTCGAGGAAACCATCGAGAACGCCAAGAACGTGGTCGTTTCCGGCGACCAG
ATGAGTTCGAGCCTGGCGACGAGCAAGGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGGGAAGAAACCGGGTC
GCTCGACAACATGCTGAACAAGGTCGCCGACTTTTACGACCGCGAGGTGGACGAGGCCGTCGAGAGCCTGACCGCCGCCA
TCGAACCGATGATGATCGTGTTTCTCGGCGGCATCGTCGGCCTGATCGTGGCCGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGCACGCTCAGCCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
59.852 |
100 |
0.599 |