Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DVB73_RS11950 Genome accession   NZ_CP031146
Coordinates   2618193..2619560 (-) Length   455 a.a.
NCBI ID   WP_016392160.1    Uniprot ID   A0AAD0QXG7
Organism   Pseudomonas plecoglossicida strain XSDHY-P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2613193..2624560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVB73_RS11930 (DVB73_11925) - 2613489..2613686 (-) 198 WP_016392156.1 YbdD/YjiX family protein -
  DVB73_RS11935 (DVB73_11930) - 2613700..2615766 (-) 2067 WP_016392157.1 carbon starvation CstA family protein -
  DVB73_RS11940 (DVB73_11935) - 2615932..2616294 (+) 363 WP_016392158.1 PilZ domain-containing protein -
  DVB73_RS11945 (DVB73_11940) - 2616558..2618075 (+) 1518 WP_016392159.1 nucleobase:cation symporter-2 family protein -
  DVB73_RS11950 (DVB73_11945) radA 2618193..2619560 (-) 1368 WP_016392160.1 DNA repair protein RadA Machinery gene
  DVB73_RS11955 (DVB73_11950) mscL 2619739..2620158 (+) 420 WP_016392161.1 large-conductance mechanosensitive channel protein MscL -
  DVB73_RS11960 (DVB73_11955) - 2620189..2620965 (-) 777 WP_016392162.1 ferredoxin--NADP reductase -
  DVB73_RS11965 (DVB73_11960) - 2621175..2621882 (+) 708 WP_016392163.1 autoinducer binding domain-containing protein -
  DVB73_RS11970 (DVB73_11965) - 2621979..2623103 (+) 1125 WP_016392164.1 methyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48713.12 Da        Isoelectric Point: 6.8985

>NTDB_id=303761 DVB73_RS11950 WP_016392160.1 2618193..2619560(-) (radA) [Pseudomonas plecoglossicida strain XSDHY-P]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESAGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=303761 DVB73_RS11950 WP_016392160.1 2618193..2619560(-) (radA) [Pseudomonas plecoglossicida strain XSDHY-P]
ATGGCCAAGGCCAAGCGCTTGTACGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGCCGGCGCCGCAGCCCCCAGCGGGCGCACCGGGTGGACCG
GGCAGCAGGCCCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAATCCCCCGCTTCACCACCAGCAGCACCGAACTG
GACCGCGTGCTGGGCGGTGGGCTGGTCGATGGTTCGGTGGTGCTGATCGGTGGCGATCCCGGCATCGGCAAGTCGACCAT
CCTGCTGCAGACCCTGTGCAACATCGCCGTGGGTATGCCGGCGTTGTATGTCACCGGCGAGGAATCCCAGCAGCAGGTGG
CCATGCGCTCGCGGCGCCTGGGCCTGCCGCAGGACCAGCTCAAGGTGATGACCGAAACCTGTATCGAGACCATCATCGCC
ACGGCGCGGCAGGAGAAGCCGCGGGTCATGGTCATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAGTCGGCGCC
CGGTGGCGTGGCCCAGGTGCGCGAGAGTACGGCGTTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTCACCAAGGAAGGCTCGCTTGCCGGCCCGCGGGTGCTGGAGCACATGGTCGACACCGTGTTGTATTTCGAG
GGCGAGTCCGATGGCCGCCTGCGCCTGTTGCGGGCGGTAAAGAACCGCTTCGGTGCGGTAAACGAGCTGGGCGTGTTCGG
CATGACCGACCGCGGCCTGAAGGAGGTGTCCAATCCTTCTGCGATCTTCCTCAACCGTGCCCAGGAAGAAGTGCCCGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGACGACAGCCATCTGGCC
AACCCGCGGCGGGTGACCCTGGGGCTGGACCAGAACCGCCTGGCCATGCTGCTGGCCGTGCTGCATCGGCATGGCGGCAT
CCCCACCCACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTACTGGAGACTGCATCCGACTTGGCATTGC
TGGCAGCGGTGATGTCCAGCTTGCGCAACCGGCCGCTGGCCCACGGCTTGCTGGTGTTCGGCGAGATTGGTCTGTCTGGC
GAGGTGCGGCCGGTGCCGAGCGGGCAGGAGCGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGGGCCATCGTACCCAA
GGGCAATGCGCCGAAGGAGTCGCCGGCGGGGTTGCAGGTGATTGCCGTGACCCGCTTGGAGCAGGCGTTGGATGCCTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus mitis NCTC 12261

45.969

100

0.464
  radA Streptococcus pneumoniae D39

46.154

100

0.462
  radA Streptococcus pneumoniae TIGR4

46.154

100

0.462
  radA Streptococcus mitis SK321

46.154

100

0.462
  radA Streptococcus pneumoniae R6

46.154

100

0.462
  radA Streptococcus pneumoniae Rx1

46.154

100

0.462

Multiple sequence alignment