Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DVB73_RS08815 Genome accession   NZ_CP031146
Coordinates   1962463..1963098 (-) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas plecoglossicida strain XSDHY-P     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1957463..1968098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVB73_RS08785 (DVB73_08780) murB 1958554..1959573 (-) 1020 WP_016391239.1 UDP-N-acetylmuramate dehydrogenase -
  DVB73_RS08790 (DVB73_08785) - 1959570..1960034 (-) 465 WP_016391240.1 low molecular weight protein-tyrosine-phosphatase -
  DVB73_RS08795 (DVB73_08790) kdsB 1960034..1960798 (-) 765 WP_016391241.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DVB73_RS08800 (DVB73_08795) - 1960795..1960980 (-) 186 WP_003247142.1 Trm112 family protein -
  DVB73_RS08805 (DVB73_08800) lpxK 1961025..1962032 (-) 1008 WP_016391242.1 tetraacyldisaccharide 4'-kinase -
  DVB73_RS08810 (DVB73_08805) - 1962032..1962466 (-) 435 WP_016391243.1 biopolymer transporter ExbD -
  DVB73_RS08815 (DVB73_08810) exbB 1962463..1963098 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DVB73_RS08820 (DVB73_08815) comA 1963153..1965390 (-) 2238 WP_016391245.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DVB73_RS08825 (DVB73_08820) - 1965533..1966159 (+) 627 WP_116131208.1 DUF2062 domain-containing protein -
  DVB73_RS08830 (DVB73_08825) - 1966043..1966822 (-) 780 WP_008096461.1 ABC transporter permease -
  DVB73_RS08835 (DVB73_08830) - 1966819..1967751 (-) 933 WP_016391248.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=303759 DVB73_RS08815 WP_016391244.1 1962463..1963098(-) (exbB) [Pseudomonas plecoglossicida strain XSDHY-P]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=303759 DVB73_RS08815 WP_016391244.1 1962463..1963098(-) (exbB) [Pseudomonas plecoglossicida strain XSDHY-P]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACGCCACCGCACCTGCTCGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGTTGGGCGAGATCCTCGCGGCAGGCCTGGCCAAC
TCGCGCCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCCTCGCGGGTCATCCACGAACTCGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCAATGGCCCCGCTGCTAGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCTAACGCCGCCGTGCTGGCAGGGGGTATCTCCAAGGCCCTGGTCACCACCGCC
GCCGGCTTGATGGTGGGTATCCCCGCCGTGTTCTTCCATCGCTTCCTGCTGCGTCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTCATCCAGGGCGACCGTGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment