Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CLD_RS05535 Genome accession   NC_010516
Coordinates   1162514..1163467 (+) Length   317 a.a.
NCBI ID   WP_015957555.1    Uniprot ID   B1IIC1
Organism   Clostridium botulinum B1 str. Okra     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1157514..1168467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD_RS05510 (CLD_3517) - 1157620..1157856 (+) 237 WP_003404721.1 SHOCT domain-containing protein -
  CLD_RS05515 (CLD_3516) - 1158126..1158827 (+) 702 WP_003404723.1 response regulator transcription factor -
  CLD_RS05520 (CLD_3515) - 1158833..1160248 (+) 1416 WP_041173286.1 HAMP domain-containing sensor histidine kinase -
  CLD_RS05525 (CLD_3514) - 1160588..1161274 (-) 687 WP_011987957.1 DNA alkylation repair protein -
  CLD_RS05530 (CLD_3513) - 1161510..1162268 (-) 759 WP_003388491.1 AraC family transcriptional regulator -
  CLD_RS05535 (CLD_3512) ceuB 1162514..1163467 (+) 954 WP_015957555.1 ABC transporter permease Machinery gene
  CLD_RS05540 (CLD_3511) - 1163457..1164407 (+) 951 WP_003404725.1 iron chelate uptake ABC transporter family permease subunit -
  CLD_RS05545 (CLD_3510) - 1164404..1165159 (+) 756 WP_015957820.1 ATP-binding cassette domain-containing protein -
  CLD_RS05550 (CLD_3509) - 1165233..1166177 (+) 945 WP_015957540.1 siderophore ABC transporter substrate-binding protein -
  CLD_RS05555 (CLD_3508) - 1166379..1167380 (+) 1002 WP_003404766.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34875.24 Da        Isoelectric Point: 9.9543

>NTDB_id=30369 CLD_RS05535 WP_015957555.1 1162514..1163467(+) (ceuB) [Clostridium botulinum B1 str. Okra]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLVSRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=30369 CLD_RS05535 WP_015957555.1 1162514..1163467(+) (ceuB) [Clostridium botulinum B1 str. Okra]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAGTTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGCTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1IIC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment