Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6669_RS24585 Genome accession   NZ_CP031134
Coordinates   4710055..4710684 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CFSAN064035     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4705055..4715684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6669_RS24570 (C6669_24570) helD 4705297..4707351 (-) 2055 WP_001297106.1 DNA helicase IV -
  C6669_RS24575 (C6669_24575) yccF 4707474..4707920 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6669_RS24580 (C6669_24580) yccS 4707930..4710092 (+) 2163 WP_000875015.1 YccS family putative transporter -
  C6669_RS24585 (C6669_24585) sxy/tfoX 4710055..4710684 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6669_RS24590 (C6669_24590) sulA 4710903..4711412 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6669_RS24600 (C6669_24600) ompA 4711769..4712821 (+) 1053 WP_000750419.1 porin OmpA -
  C6669_RS24605 (C6669_24605) matP 4712897..4713349 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6669_RS24610 (C6669_24610) ycbZ 4713535..4715295 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=303674 C6669_RS24585 WP_000839153.1 4710055..4710684(-) (sxy/tfoX) [Escherichia coli strain CFSAN064035]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=303674 C6669_RS24585 WP_000839153.1 4710055..4710684(-) (sxy/tfoX) [Escherichia coli strain CFSAN064035]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment