Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   U12A_RS19180 Genome accession   NZ_CP035476
Coordinates   3331460..3332662 (+) Length   400 a.a.
NCBI ID   WP_001554267.1    Uniprot ID   -
Organism   Escherichia coli strain U12A     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3326460..3337662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U12A_RS19165 (U12A_03186) - 3326975..3328651 (+) 1677 WP_001554264.1 polysaccharide biosynthesis/export family protein -
  U12A_RS19170 (U12A_03187) kdsB 3328661..3329401 (+) 741 WP_001554265.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U12A_RS19175 (U12A_03188) - 3329398..3331425 (+) 2028 WP_001554266.1 capsular polysaccharide biosynthesis protein -
  U12A_RS19180 (U12A_03189) kpsS 3331460..3332662 (+) 1203 WP_001554267.1 capsular biosynthesis protein Regulator
  U12A_RS19185 (U12A_03190) - 3333039..3333815 (+) 777 WP_001533607.1 ABC transporter permease -
  U12A_RS19190 (U12A_03191) - 3333812..3334477 (+) 666 WP_001554269.1 ABC transporter ATP-binding protein -
  U12A_RS19195 (U12A_03192) - 3334503..3336269 (+) 1767 WP_250190005.1 hypothetical protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 47528.92 Da        Isoelectric Point: 10.1180

>NTDB_id=303652 U12A_RS19180 WP_001554267.1 3331460..3332662(+) (kpsS) [Escherichia coli strain U12A]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGGEGFKSRKCA

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=303652 U12A_RS19180 WP_001554267.1 3331460..3332662(+) (kpsS) [Escherichia coli strain U12A]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAGTTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTGTTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCGCTGATTCACAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTTAAGACGCAGGTTAATGCGGTTTATTATGGGGGGGAGGGTTTTAAAAGTAGAAAATGTGCG
TAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

97.25

0.388

Multiple sequence alignment