Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   U12A_RS13985 Genome accession   NZ_CP035476
Coordinates   2236038..2236514 (+) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli strain U12A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2231038..2241514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U12A_RS13945 (U12A_02184) istB 2232566..2233312 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  U12A_RS13955 (U12A_02185) - 2233395..2233745 (+) 351 Protein_2225 hypothetical protein -
  U12A_RS13960 (U12A_02186) - 2233761..2234171 (+) 411 WP_000846703.1 hypothetical protein -
  U12A_RS13970 (U12A_02187) - 2234392..2235210 (+) 819 WP_001542275.1 DUF932 domain-containing protein -
  U12A_RS13975 (U12A_02188) - 2235210..2235455 (+) 246 WP_001164966.1 hypothetical protein -
  U12A_RS13980 (U12A_02189) - 2235549..2236022 (+) 474 WP_001542276.1 antirestriction protein -
  U12A_RS13985 (U12A_02190) radC 2236038..2236514 (+) 477 WP_001186200.1 RadC family protein Machinery gene
  U12A_RS13990 (U12A_02191) yeeT 2236577..2236798 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  U12A_RS13995 (U12A_02192) - 2236817..2237461 (+) 645 WP_000086752.1 hypothetical protein -
  U12A_RS14000 (U12A_02193) cbeA 2237477..2237845 (+) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  U12A_RS14005 (U12A_02194) cbtA 2237934..2238308 (+) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  U12A_RS14010 (U12A_02195) yeeW 2238305..2238499 (+) 195 WP_000988600.1 DUF5983 family protein -
  U12A_RS14015 - 2238545..2238625 (+) 81 Protein_2236 hypothetical protein -
  U12A_RS28535 - 2238914..2239087 (-) 174 WP_032082634.1 transposase domain-containing protein -
  U12A_RS28540 - 2239114..2239296 (+) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  U12A_RS14030 (U12A_02196) tmaR 2239397..2239726 (-) 330 WP_000450409.1 DUF496 family protein -
  U12A_RS14035 (U12A_02197) yeeA 2239898..2240956 (-) 1059 WP_001200889.1 FUSC family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=303633 U12A_RS13985 WP_001186200.1 2236038..2236514(+) (radC) [Escherichia coli strain U12A]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=303633 U12A_RS13985 WP_001186200.1 2236038..2236514(+) (radC) [Escherichia coli strain U12A]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392