Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VCM66_RS08605 Genome accession   NC_012578
Coordinates   1883254..1883730 (+) Length   158 a.a.
NCBI ID   WP_000148675.1    Uniprot ID   Q9KR57
Organism   Vibrio cholerae M66-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1878254..1888730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCM66_RS08590 (VCM66_1721) nagA 1878883..1880019 (+) 1137 WP_001185226.1 N-acetylglucosamine-6-phosphate deacetylase -
  VCM66_RS08595 (VCM66_1722) - 1880442..1882787 (+) 2346 WP_001211290.1 exo-alpha-sialidase -
  VCM66_RS08600 (VCM66_1723) - 1882934..1883110 (-) 177 WP_001211490.1 AlpA family transcriptional regulator -
  VCM66_RS08605 (VCM66_1724) radC 1883254..1883730 (+) 477 WP_000148675.1 DNA repair protein RadC Machinery gene
  VCM66_RS19950 (VCM66_1725) - 1883727..1883858 (+) 132 Protein_1597 DUF2787 domain-containing protein -
  VCM66_RS08610 (VCM66_1726) - 1883960..1884655 (-) 696 WP_000213836.1 hypothetical protein -
  VCM66_RS18505 - 1885894..1886001 (+) 108 Protein_1600 DUF2787 family protein -
  VCM66_RS08630 (VCM66_1729) - 1886108..1887094 (+) 987 WP_000858600.1 GTPase family protein -
  VCM66_RS19660 - 1887129..1887521 (-) 393 WP_071908289.1 inovirus Gp2 family protein -
  VCM66_RS19665 - 1887530..1887769 (-) 240 WP_001881569.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18274.71 Da        Isoelectric Point: 6.9191

>NTDB_id=30338 VCM66_RS08605 WP_000148675.1 1883254..1883730(+) (radC) [Vibrio cholerae M66-2]
MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDNQHRLIEFKELFRG
TVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=30338 VCM66_RS08605 WP_000148675.1 1883254..1883730(+) (radC) [Vibrio cholerae M66-2]
ATGACTCATTTCCCTCGCCACCGCTATCTACTCTCGCAACGAGCTTATGAGCATCGAGTACTGGAAGAAGCAGCAGAGAT
CCTTGAACAGCGTTATGTGCGCGGTGAAACCTTTGCACGTACGGAAAACACCACGGAATACTTACGCTGTAAACTTGCTG
GATATGAGCACGAAATCTTTGCCGTACTGTTTTTGGATAACCAGCATCGGCTAATTGAATTTAAGGAGCTATTTCGCGGT
ACGGTCGATGCCGCCAGTGTCTACCCAAGAGAGGTATTAAAGGAGGCACTAAACGTTAACGCAGCAGCGGTGATCTTTGC
CCATAACCACCCCTCTGGCGATCCTGAGCCTTCACAAGCCGATAGGCGTATTACTCAGCGCTTAAAAGACGCCTTATCAC
TGGTAGATATTCGTGTGCTAGACCATGTGGTCGTTGGCAAAAGCAGTGTGTCATTTGCAGAAAGGGGCTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(41-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.286

88.608

0.437

Multiple sequence alignment