Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ETT46_RS06420 Genome accession   NZ_CP035453
Coordinates   1217496..1219157 (-) Length   553 a.a.
NCBI ID   WP_085613973.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1212496..1224157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT46_RS06395 (ETT46_06390) - 1213536..1213811 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  ETT46_RS06400 (ETT46_06395) - 1213910..1214497 (-) 588 WP_136265213.1 YpmS family protein -
  ETT46_RS06405 (ETT46_06400) - 1214475..1215317 (-) 843 WP_168391515.1 SGNH/GDSL hydrolase family protein -
  ETT46_RS06410 (ETT46_06405) - 1215310..1216149 (-) 840 WP_002989125.1 DegV family protein -
  ETT46_RS06415 (ETT46_06410) - 1216377..1217324 (-) 948 WP_136110307.1 LPXTG cell wall anchor domain-containing protein -
  ETT46_RS06420 (ETT46_06415) recN 1217496..1219157 (-) 1662 WP_085613973.1 DNA repair protein RecN Machinery gene
  ETT46_RS06425 (ETT46_06420) - 1219179..1219649 (-) 471 WP_002983907.1 arginine repressor -
  ETT46_RS06430 (ETT46_06425) - 1219636..1220463 (-) 828 WP_136022518.1 TlyA family RNA methyltransferase -
  ETT46_RS06435 (ETT46_06430) - 1220456..1221328 (-) 873 WP_136110864.1 polyprenyl synthetase family protein -
  ETT46_RS06440 (ETT46_06435) - 1221328..1221543 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  ETT46_RS06445 (ETT46_06440) xseA 1221521..1222861 (-) 1341 WP_002992349.1 exodeoxyribonuclease VII large subunit -
  ETT46_RS06450 (ETT46_06445) - 1223014..1223868 (-) 855 WP_002989114.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62299.47 Da        Isoelectric Point: 4.6141

>NTDB_id=303378 ETT46_RS06420 WP_085613973.1 1217496..1219157(-) (recN) [Streptococcus pyogenes strain emm100]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIIKEYQLLTGDELSSGDLEAELKSLEKQLVAAATNLSERRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=303378 ETT46_RS06420 WP_085613973.1 1217496..1219157(-) (recN) [Streptococcus pyogenes strain emm100]
ATGTTATTAGAAATTTCTATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGAGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAATACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATTATCAAAGAATACCAGCTATTAACAGGCGATGAGTTGTCTTCAGGGGATCT
AGAGGCAGAATTGAAAAGCTTGGAAAAACAATTGGTTGCTGCAGCCACTAACTTGAGTGAACGCCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.452

Multiple sequence alignment