Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DVA43_RS09845 Genome accession   NZ_CP031104
Coordinates   1985200..1985829 (-) Length   209 a.a.
NCBI ID   WP_114315420.1    Uniprot ID   A0AAD0PPL0
Organism   Leclercia sp. W6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1980200..1990829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVA43_RS09830 (DVA43_09830) helD 1980441..1982495 (-) 2055 WP_114315418.1 DNA helicase IV -
  DVA43_RS09835 (DVA43_09835) - 1982619..1983065 (+) 447 WP_103178960.1 YccF domain-containing protein -
  DVA43_RS09840 (DVA43_09840) yccS 1983084..1985219 (+) 2136 WP_114315419.1 YccS family putative transporter -
  DVA43_RS09845 (DVA43_09845) sxy/tfoX 1985200..1985829 (-) 630 WP_114315420.1 TfoX/Sxy family DNA transformation protein Regulator
  DVA43_RS09850 (DVA43_09850) sulA 1986047..1986556 (+) 510 WP_103178957.1 SOS-induced cell division inhibitor SulA -
  DVA43_RS09855 (DVA43_09855) ompA 1986912..1987967 (+) 1056 WP_114317116.1 porin OmpA -
  DVA43_RS09860 (DVA43_09860) matP 1988034..1988489 (-) 456 WP_103178956.1 macrodomain Ter protein MatP -
  DVA43_RS09865 (DVA43_09865) - 1988676..1990436 (+) 1761 WP_114315421.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23931.59 Da        Isoelectric Point: 7.8675

>NTDB_id=303378 DVA43_RS09845 WP_114315420.1 1985200..1985829(-) (sxy/tfoX) [Leclercia sp. W6]
MKKLSYERIYQSAEYLSPLGEVHYRALFGGYTLAVDDTVFAMVSEGELYLRACEESAPYCVKHASTFLSLVKRGRPVLLN
YYRVDEGLWQDREKLLQLSSFALEAARRERSARYKRERLKDLPNLTFQLEILLYEAGITTEEALRALGAEQSWLKIKALN
KHLSYKVLFALEGAITGLHVAALPEGRRQELVEWYKKLPVETPLTPAAD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=303378 DVA43_RS09845 WP_114315420.1 1985200..1985829(-) (sxy/tfoX) [Leclercia sp. W6]
ATGAAAAAGTTATCGTATGAACGGATCTATCAATCAGCAGAATACCTGTCTCCTCTCGGCGAGGTGCACTATCGCGCCCT
GTTTGGCGGTTACACTCTGGCGGTAGATGACACGGTATTTGCCATGGTGTCGGAAGGGGAGTTATACCTGCGGGCCTGTG
AGGAGAGCGCACCTTACTGTGTAAAACATGCCTCGACTTTCCTGTCGCTGGTAAAGCGGGGGCGGCCTGTGTTGTTGAAC
TATTATCGCGTTGATGAAGGTCTCTGGCAGGATCGCGAAAAACTTCTGCAGCTCTCCTCGTTTGCGCTGGAAGCGGCGCG
GCGGGAGCGCAGCGCACGCTATAAGCGCGAAAGGCTGAAAGATTTACCCAATCTCACCTTTCAACTGGAGATCCTGCTTT
ATGAAGCGGGCATCACCACCGAAGAGGCATTACGCGCGCTGGGGGCGGAACAGTCCTGGCTGAAGATCAAAGCGCTGAAC
AAGCACCTCAGTTATAAGGTGCTGTTTGCACTGGAAGGGGCAATCACCGGGCTGCACGTCGCTGCACTCCCGGAAGGCAG
ACGCCAGGAGCTTGTGGAGTGGTACAAAAAGCTGCCGGTAGAGACTCCCCTTACTCCGGCAGCTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

60.101

94.737

0.569

Multiple sequence alignment