Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ETT46_RS04880 Genome accession   NZ_CP035453
Coordinates   932542..933612 (-) Length   356 a.a.
NCBI ID   WP_136264964.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 927542..938612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT46_RS04860 (ETT46_04855) citX 928123..928701 (+) 579 WP_136264958.1 citrate lyase holo-[acyl-carrier protein] synthase -
  ETT46_RS04865 (ETT46_04860) - 928716..930110 (+) 1395 WP_186789086.1 oxaloacetate decarboxylase subunit alpha -
  ETT46_RS04870 (ETT46_04865) citC 930220..931272 (-) 1053 WP_002991776.1 [citrate (pro-3S)-lyase] ligase -
  ETT46_RS04875 (ETT46_04870) - 931361..931843 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  ETT46_RS04880 (ETT46_04875) xerS 932542..933612 (-) 1071 WP_136264964.1 tyrosine recombinase XerS Machinery gene
  ETT46_RS04885 (ETT46_04880) - 934082..934780 (+) 699 WP_002993300.1 S24 family peptidase -
  ETT46_RS04890 (ETT46_04885) ffh 934897..936459 (-) 1563 WP_038434105.1 signal recognition particle protein -
  ETT46_RS04895 (ETT46_04890) - 936474..936806 (-) 333 WP_002989745.1 putative DNA-binding protein -
  ETT46_RS04900 (ETT46_04895) - 936904..937602 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41470.63 Da        Isoelectric Point: 9.6864

>NTDB_id=303364 ETT46_RS04880 WP_136264964.1 932542..933612(-) (xerS) [Streptococcus pyogenes strain emm100]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLKHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=303364 ETT46_RS04880 WP_136264964.1 932542..933612(-) (xerS) [Streptococcus pyogenes strain emm100]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTAAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803