Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AGE29_RS08250 Genome accession   NZ_CP031097
Coordinates   1356904..1357857 (-) Length   317 a.a.
NCBI ID   WP_012720573.1    Uniprot ID   -
Organism   Clostridium botulinum strain CFSAN034200     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1351904..1362857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AGE29_RS08225 (AGE29_08225) - 1352995..1353996 (-) 1002 WP_012721342.1 AraC family transcriptional regulator -
  AGE29_RS08235 (AGE29_08235) - 1354198..1355142 (-) 945 WP_012721035.1 siderophore ABC transporter substrate-binding protein -
  AGE29_RS08240 (AGE29_08240) - 1355212..1355967 (-) 756 WP_003361010.1 ATP-binding cassette domain-containing protein -
  AGE29_RS08245 (AGE29_08245) - 1355964..1356914 (-) 951 WP_012720996.1 iron chelate uptake ABC transporter family permease subunit -
  AGE29_RS08250 (AGE29_08250) ceuB 1356904..1357857 (-) 954 WP_012720573.1 ABC transporter permease Machinery gene
  AGE29_RS08255 (AGE29_08255) - 1358103..1358861 (+) 759 WP_041173323.1 AraC family transcriptional regulator -
  AGE29_RS08260 (AGE29_08260) - 1359097..1359783 (+) 687 WP_012720854.1 DNA alkylation repair protein -
  AGE29_RS08265 (AGE29_08265) - 1360100..1361506 (-) 1407 WP_012721102.1 HAMP domain-containing sensor histidine kinase -
  AGE29_RS08270 (AGE29_08270) - 1361506..1362207 (-) 702 WP_003361004.1 response regulator transcription factor -
  AGE29_RS08275 (AGE29_08275) - 1362467..1362703 (-) 237 WP_003361003.1 SHOCT domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34902.31 Da        Isoelectric Point: 10.0382

>NTDB_id=303315 AGE29_RS08250 WP_012720573.1 1356904..1357857(-) (ceuB) [Clostridium botulinum strain CFSAN034200]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIIVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFIGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=303315 AGE29_RS08250 WP_012720573.1 1356904..1357857(-) (ceuB) [Clostridium botulinum strain CFSAN034200]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATCAGTAGAATCCCAAGACTTATAAGTATTATTA
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGGAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTTGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATACAATCTTATT
CAAAGTATTGCCTCTTGGCTTCAGGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTGGGAAAA
ATACCATTTATAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGCTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment