Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DT065_RS11795 Genome accession   NZ_CP031092
Coordinates   2324546..2325934 (+) Length   462 a.a.
NCBI ID   WP_114373579.1    Uniprot ID   A0A345C096
Organism   Salicibibacter kimchii strain NKC1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2319546..2330934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT065_RS11775 (DT065_11770) - 2319801..2320271 (+) 471 WP_114373571.1 CtsR family transcriptional regulator -
  DT065_RS11780 (DT065_11775) - 2320292..2320834 (+) 543 WP_114373573.1 UvrB/UvrC motif-containing protein -
  DT065_RS11785 (DT065_11780) - 2320834..2321922 (+) 1089 WP_114373575.1 protein arginine kinase -
  DT065_RS11790 (DT065_11785) - 2321919..2324372 (+) 2454 WP_114373577.1 ATP-dependent Clp protease ATP-binding subunit -
  DT065_RS11795 (DT065_11790) radA 2324546..2325934 (+) 1389 WP_114373579.1 DNA repair protein RadA Machinery gene
  DT065_RS11800 (DT065_11795) disA 2325950..2327023 (+) 1074 WP_114373581.1 DNA integrity scanning diadenylate cyclase DisA -
  DT065_RS11805 (DT065_11800) - 2327174..2328292 (+) 1119 WP_114376273.1 PIN/TRAM domain-containing protein -
  DT065_RS11810 (DT065_11805) ispD 2328513..2329229 (+) 717 WP_114373583.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DT065_RS11815 (DT065_11810) ispF 2329207..2329680 (+) 474 WP_114373585.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50473.80 Da        Isoelectric Point: 5.6139

>NTDB_id=303279 DT065_RS11795 WP_114373579.1 2324546..2325934(+) (radA) [Salicibibacter kimchii strain NKC1-1]
MAKTKTKFVCQECTYESRKWMGRCPSCQNWNTLVEEMEGNEPKRPGGTVRSVGSNRPQKISDVNTQDEPRMTTKLSELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQLSTLLAEDEKKVLYISGEESVKQTKMRADRLKAKADTLYVLTETDTSLIDQA
VDMVEPDVLIIDSVQTMQTPDISSAPGSVAQVRESTSVFMSMAKSRGISVFVVGHVTKQGSIAGPKMLEHMVDAVLYFEG
ERHHTFRILRAVKNRFGSTNEIGIFDMNEEGLQEVLNPSEIFLEERSEGVAGATVVASLEGTRPVLVELQALVAPTSYAN
PRRTATGVDHNRVSLLMAVLEKRVGMLLQNQDAYINVAGGVKLDEPAVDLALATSIASSFRNQVTRTTDVAIGEVGLTGE
IRRVSRIQERVKESAKLGFERCIIPEKNMGGWKAPDGMTCVGVGSLEEALDVMLEKRTKTWE

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=303279 DT065_RS11795 WP_114373579.1 2324546..2325934(+) (radA) [Salicibibacter kimchii strain NKC1-1]
ATGGCGAAAACAAAGACCAAGTTTGTTTGCCAGGAATGTACGTATGAATCCCGGAAGTGGATGGGCCGTTGTCCTTCATG
CCAGAATTGGAACACGCTGGTAGAGGAGATGGAGGGGAATGAGCCAAAACGTCCGGGCGGTACGGTGCGTTCCGTGGGGA
GTAATCGCCCACAAAAAATCAGTGACGTAAACACCCAAGACGAACCGCGAATGACGACGAAATTATCAGAATTAAATCGT
GTTTTAGGCGGGGGAATTGTCCCCGGCTCCCTGGTTCTTGTCGGAGGTGACCCCGGTATTGGCAAGTCAACGCTGCTTTT
GCAACTGTCCACACTTTTGGCAGAAGACGAAAAAAAAGTGTTATATATATCCGGAGAGGAATCGGTCAAACAAACAAAAA
TGCGTGCCGATCGTTTGAAAGCCAAGGCGGATACCTTGTACGTGCTTACCGAAACGGATACGTCATTGATTGATCAGGCA
GTGGACATGGTGGAACCGGATGTATTGATCATTGATTCGGTCCAAACCATGCAAACGCCAGATATCTCCTCTGCTCCCGG
AAGTGTCGCCCAAGTAAGGGAATCGACGTCTGTTTTTATGAGCATGGCAAAATCCCGGGGTATTTCGGTGTTTGTTGTCG
GCCACGTAACAAAACAAGGTTCGATTGCAGGCCCGAAAATGCTGGAACATATGGTGGATGCGGTGCTTTATTTTGAGGGG
GAGCGGCATCATACGTTTCGAATTTTGCGTGCAGTGAAAAATCGCTTTGGTTCCACAAATGAAATTGGCATTTTTGATAT
GAATGAAGAAGGTTTGCAAGAAGTGTTGAATCCGTCGGAAATTTTCTTGGAAGAGCGTTCGGAAGGGGTTGCGGGCGCAA
CGGTCGTGGCATCCCTTGAAGGAACCCGCCCCGTTTTGGTGGAGTTACAAGCGCTTGTTGCACCGACCAGCTATGCCAAT
CCCAGACGTACGGCAACCGGTGTGGACCATAACCGTGTGTCCTTGCTGATGGCGGTATTGGAAAAGCGAGTAGGAATGCT
GCTTCAAAATCAAGATGCTTATATTAATGTTGCCGGTGGCGTAAAATTGGATGAACCGGCCGTTGATTTGGCGCTGGCGA
CGAGTATCGCTTCAAGTTTTCGCAATCAGGTGACACGCACGACGGATGTTGCGATCGGTGAAGTAGGTTTGACGGGGGAA
ATCCGCAGGGTCTCCCGCATTCAGGAAAGGGTAAAGGAAAGCGCGAAACTAGGGTTTGAACGTTGCATCATTCCCGAAAA
AAATATGGGTGGCTGGAAAGCCCCCGATGGCATGACATGTGTAGGTGTTGGTTCCTTGGAAGAGGCATTAGATGTGATGC
TTGAAAAACGGACGAAAACTTGGGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(57-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345C096

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

98.701

0.647
  radA Streptococcus pneumoniae Rx1

56.763

97.619

0.554
  radA Streptococcus pneumoniae D39

56.763

97.619

0.554
  radA Streptococcus pneumoniae R6

56.763

97.619

0.554
  radA Streptococcus pneumoniae TIGR4

56.763

97.619

0.554
  radA Streptococcus mitis NCTC 12261

56.763

97.619

0.554
  radA Streptococcus mitis SK321

56.763

97.619

0.554

Multiple sequence alignment