Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DT065_RS01360 Genome accession   NZ_CP031092
Coordinates   223704..225416 (+) Length   570 a.a.
NCBI ID   WP_114370197.1    Uniprot ID   -
Organism   Salicibibacter kimchii strain NKC1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 218704..230416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT065_RS01335 (DT065_01335) xseB 218746..219003 (+) 258 WP_257791143.1 exodeoxyribonuclease VII small subunit -
  DT065_RS01340 (DT065_01340) - 219170..220063 (+) 894 WP_227002689.1 polyprenyl synthetase family protein -
  DT065_RS01345 (DT065_01345) dxs 220293..222182 (+) 1890 WP_114370191.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DT065_RS01350 (DT065_01350) - 222226..223023 (+) 798 WP_114370193.1 TlyA family RNA methyltransferase -
  DT065_RS01355 (DT065_01355) ahrC 223088..223537 (+) 450 WP_114370195.1 transcriptional regulator AhrC/ArgR -
  DT065_RS01360 (DT065_01360) recN 223704..225416 (+) 1713 WP_114370197.1 DNA repair protein RecN Machinery gene
  DT065_RS01365 (DT065_01365) spoIVB 225575..226810 (+) 1236 WP_114370199.1 SpoIVB peptidase -
  DT065_RS01370 (DT065_01370) - 226779..227150 (+) 372 WP_114370201.1 hypothetical protein -
  DT065_RS01380 (DT065_01380) spo0A 227517..228308 (+) 792 WP_114370205.1 sporulation transcription factor Spo0A -
  DT065_RS01385 (DT065_01385) - 228453..229424 (+) 972 WP_227002690.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 63946.81 Da        Isoelectric Point: 4.5330

>NTDB_id=303255 DT065_RS01360 WP_114370197.1 223704..225416(+) (recN) [Salicibibacter kimchii strain NKC1-1]
MLEELTIRNFAIIEELTIPFGSGLTVLTGETGAGKSIIIDALGLLAGGRGSVDFVRHESKKAEIEGLFIVSSDHLAYERM
ASAGIECEEGMIVLKREISRKGKSVCRVNGHLVTLTTLRSIGQTLVDIHGQHEHQELLQMDKHSGLVDAYADSTLSALKS
EYEDRYEKYLSIKNELQRLRNSDRENIQRLDLIQYQLEEIEQAALSEPDEEQQLEQERYKLAHAEKLYELLQYAYTYLHD
EGKGLEWIRESAGHLKEASDIDPALVQTSEQVDSSFYMIEEASYSIREHIDQLDFDPARLEQIERRLDEIDQLKRKYGGS
ITEILAFSEEIAEEQEALVNLDEHIRQYEEELKEKAAELFSAANALTAGRREAAKTLSEAVERELADLFMEKTRFSVAFQ
APFQGEEVQSDGQVKTFTKDGQERLEFYMSPNAGEPEKPLIKIASGGEISRIMLALKRILSNSSQRTALIFDEVDTGVSG
RVAQAIGEKIAAIANAETQVLCITHLPQVAALASTHMHIAKEEKEGRVHTTVTDLDDTARVDELARMLSGSEVTTKTREN
ARELLDLATS

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=303255 DT065_RS01360 WP_114370197.1 223704..225416(+) (recN) [Salicibibacter kimchii strain NKC1-1]
TTGCTCGAAGAACTGACGATTCGAAATTTTGCGATCATCGAAGAACTGACGATTCCATTTGGATCAGGATTAACCGTGCT
TACTGGGGAAACGGGAGCGGGAAAATCGATCATTATCGATGCCCTCGGTTTGTTGGCGGGCGGTCGCGGTTCTGTAGATT
TTGTGCGCCATGAAAGTAAAAAAGCGGAAATCGAAGGTCTGTTTATCGTGTCAAGCGACCATTTGGCCTATGAACGTATG
GCTTCTGCCGGCATCGAGTGTGAAGAGGGAATGATCGTTTTAAAGAGAGAGATCTCCCGAAAAGGAAAGAGCGTCTGCAG
AGTCAACGGGCATCTGGTTACCTTAACGACGTTGCGGTCGATTGGACAAACATTGGTGGATATCCATGGGCAGCATGAAC
ATCAGGAATTGTTACAAATGGACAAGCACAGTGGATTGGTCGATGCATACGCGGATTCGACATTGTCTGCGTTAAAATCC
GAATATGAAGATCGCTATGAAAAGTATTTGTCGATTAAAAATGAATTGCAACGTTTACGGAACAGCGATCGTGAAAATAT
TCAGCGGCTTGACCTCATTCAATACCAACTGGAAGAAATTGAACAAGCAGCATTATCCGAACCCGATGAAGAACAGCAGT
TGGAACAAGAACGCTATAAATTGGCACATGCAGAGAAATTATACGAGCTCCTGCAATATGCCTACACCTATTTACATGAT
GAGGGCAAAGGGTTGGAATGGATCAGAGAATCCGCCGGCCATCTGAAAGAGGCTAGCGATATTGACCCTGCATTAGTTCA
AACGAGCGAACAAGTGGATTCCAGTTTTTATATGATTGAAGAAGCTTCTTATTCCATCCGGGAACACATCGATCAGCTCG
ACTTTGATCCGGCGCGTTTGGAGCAAATCGAAAGGCGCTTGGATGAAATCGACCAACTGAAACGAAAGTACGGGGGATCA
ATTACAGAAATATTGGCCTTTTCCGAAGAAATCGCCGAGGAACAAGAAGCACTTGTAAATTTGGATGAGCACATCCGCCA
ATATGAAGAGGAATTAAAAGAAAAGGCCGCGGAGCTTTTTTCTGCAGCAAATGCTCTTACAGCGGGAAGAAGAGAAGCTG
CAAAAACGCTTTCGGAAGCAGTTGAACGCGAACTGGCTGATCTGTTTATGGAGAAAACGCGATTTTCCGTGGCTTTTCAA
GCTCCATTTCAAGGAGAAGAAGTGCAGAGTGACGGTCAGGTAAAAACATTTACAAAAGACGGGCAAGAACGTTTGGAGTT
TTATATGTCGCCTAATGCCGGAGAGCCTGAGAAACCTTTGATAAAAATTGCCTCAGGCGGCGAAATTTCTCGAATTATGC
TCGCGCTCAAACGGATATTGTCAAATTCATCGCAACGGACAGCGTTGATTTTTGATGAAGTGGATACAGGGGTAAGCGGA
CGGGTCGCGCAAGCCATTGGAGAAAAAATTGCCGCGATCGCCAACGCTGAAACCCAAGTGCTTTGCATCACCCATTTGCC
GCAAGTCGCGGCGCTGGCATCGACGCATATGCATATAGCCAAAGAGGAAAAAGAAGGACGTGTACACACAACGGTAACCG
ATCTTGACGACACTGCACGTGTCGATGAGTTGGCACGTATGCTATCGGGAAGCGAGGTAACGACAAAAACGCGAGAAAAC
GCGCGTGAACTTTTGGATCTTGCAACATCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.126

100

0.493

Multiple sequence alignment