Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   DN409_RS21275 Genome accession   NZ_CP031071
Coordinates   4148718..4149512 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain BPN401     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4143718..4154512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN409_RS21240 (DN409_21245) - 4144027..4144590 (-) 564 WP_149190905.1 PRK06770 family protein -
  DN409_RS21245 (DN409_21250) - 4144888..4144983 (-) 96 Protein_4091 sporulation initiation factor Spo0A C-terminal domain-containing protein -
  DN409_RS21250 (DN409_21255) - 4145188..4145646 (-) 459 WP_078184421.1 SMI1/KNR4 family protein -
  DN409_RS21255 (DN409_21260) - 4145665..4146117 (-) 453 WP_063218917.1 YrhA family protein -
  DN409_RS31670 - 4146096..4146221 (-) 126 WP_098167373.1 hypothetical protein -
  DN409_RS21260 (DN409_21265) - 4146262..4146876 (-) 615 WP_078184422.1 hypothetical protein -
  DN409_RS21265 (DN409_21270) - 4146860..4148125 (-) 1266 WP_149190906.1 WXG100 family type VII secretion target -
  DN409_RS21275 (DN409_21280) spo0A 4148718..4149512 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  DN409_RS21285 (DN409_21290) spoIVB 4149799..4151091 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  DN409_RS21290 (DN409_21295) recN 4151211..4152950 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  DN409_RS21295 (DN409_21300) argR 4153221..4153670 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=303219 DN409_RS21275 WP_002015081.1 4148718..4149512(-) (spo0A) [Bacillus mycoides strain BPN401]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=303219 DN409_RS21275 WP_002015081.1 4148718..4149512(-) (spo0A) [Bacillus mycoides strain BPN401]
GTGGAAAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGATATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAGCCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACAATCGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment