Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DN409_RS20295 Genome accession   NZ_CP031071
Coordinates   3979674..3980132 (+) Length   152 a.a.
NCBI ID   WP_002192638.1    Uniprot ID   R8I4H6
Organism   Bacillus mycoides strain BPN401     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3974674..3985132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN409_RS20280 (DN409_20295) - 3975337..3975573 (+) 237 WP_002014830.1 hypothetical protein -
  DN409_RS20285 (DN409_20300) - 3975741..3977849 (-) 2109 WP_061689315.1 polyphosphate kinase -
  DN409_RS20290 (DN409_20305) - 3977958..3979532 (-) 1575 WP_044442827.1 Ppx/GppA family phosphatase -
  DN409_RS20295 (DN409_20310) kre 3979674..3980132 (+) 459 WP_002192638.1 YkyB family protein Regulator
  DN409_RS20300 (DN409_20315) - 3980165..3980827 (-) 663 WP_002014826.1 YkyA family protein -
  DN409_RS20305 (DN409_20320) - 3981378..3982031 (-) 654 WP_002033822.1 diguanylate cyclase domain-containing protein -
  DN409_RS20310 (DN409_20325) - 3982194..3982427 (+) 234 WP_002014824.1 phage holin -
  DN409_RS20315 (DN409_20330) - 3982459..3982959 (-) 501 WP_002033821.1 hypothetical protein -
  DN409_RS20320 (DN409_20335) - 3983512..3985053 (+) 1542 WP_002014821.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17727.42 Da        Isoelectric Point: 10.6793

>NTDB_id=303217 DN409_RS20295 WP_002192638.1 3979674..3980132(+) (kre) [Bacillus mycoides strain BPN401]
MKPSQPQSPLHNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKDDFRTLPHLGHLESSYRNPKTTLSLTIAKKTLQDYIGPEALKQEKKLSEAVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=303217 DN409_RS20295 WP_002192638.1 3979674..3980132(+) (kre) [Bacillus mycoides strain BPN401]
ATGAAACCTTCACAACCACAATCTCCATTGCATAATCAACATTCTATTAATAGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAACCCTAAGTACTTATATTGGTTAAAAAAGACTGCTTTAGAACGCTTAATTACTGAAA
AAAAGGCTATCAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGTCAACAACAATCCGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATCCCTCCTACGAAAGATGATTTTCGCACCCTACCGCATCTTGGTCACCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAATAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AGGAAAAAAAATTAAGCGAAGCAGTTCCATGGTATAGCCGTACCTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I4H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487

Multiple sequence alignment