Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DN409_RS10035 Genome accession   NZ_CP031071
Coordinates   1956613..1956900 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain BPN401     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1951613..1961900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN409_RS10015 (DN409_10005) - 1952795..1952995 (+) 201 WP_149190412.1 DUF4083 domain-containing protein -
  DN409_RS10020 (DN409_10010) - 1953023..1953484 (+) 462 WP_002141378.1 NUDIX hydrolase -
  DN409_RS10025 (DN409_10015) nadE 1953530..1954348 (-) 819 WP_002031433.1 ammonia-dependent NAD(+) synthetase -
  DN409_RS10030 (DN409_10020) - 1954613..1956493 (+) 1881 WP_061689803.1 FtsX-like permease family protein -
  DN409_RS10035 (DN409_10025) abrB 1956613..1956900 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DN409_RS10040 (DN409_10030) - 1957235..1958185 (+) 951 WP_002012402.1 serine protease -
  DN409_RS10045 (DN409_10035) - 1958284..1958370 (+) 87 Protein_1870 IS6 family transposase -
  DN409_RS10050 (DN409_10040) - 1958400..1959503 (-) 1104 WP_078422293.1 ABC transporter ATP-binding protein -
  DN409_RS10055 (DN409_10045) - 1959907..1960770 (-) 864 WP_061689805.1 CdaR family transcriptional regulator -
  DN409_RS10060 (DN409_10050) - 1960840..1961700 (-) 861 WP_061675427.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=303210 DN409_RS10035 WP_002012401.1 1956613..1956900(+) (abrB) [Bacillus mycoides strain BPN401]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=303210 DN409_RS10035 WP_002012401.1 1956613..1956900(+) (abrB) [Bacillus mycoides strain BPN401]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558

Multiple sequence alignment