Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DN409_RS07935 Genome accession   NZ_CP031071
Coordinates   1521263..1521865 (-) Length   200 a.a.
NCBI ID   WP_061688855.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN401     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1516263..1526865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN409_RS07915 (DN409_07915) dnaD 1516548..1517255 (+) 708 WP_061688852.1 DNA replication protein DnaD -
  DN409_RS07920 (DN409_07920) nth 1517271..1517918 (+) 648 WP_061688853.1 endonuclease III -
  DN409_RS07925 (DN409_07925) - 1517922..1518440 (+) 519 WP_002030796.1 YpoC family protein -
  DN409_RS07930 (DN409_07930) - 1518467..1521196 (-) 2730 WP_149190292.1 PBP1A family penicillin-binding protein -
  DN409_RS07935 (DN409_07935) recU 1521263..1521865 (-) 603 WP_061688855.1 Holliday junction resolvase RecU Machinery gene
  DN409_RS07940 (DN409_07940) - 1521969..1522994 (+) 1026 WP_002126479.1 DUF2515 domain-containing protein -
  DN409_RS31735 - 1523338..1523484 (-) 147 WP_307838604.1 phage portal protein -
  DN409_RS07945 (DN409_07945) - 1523603..1523845 (+) 243 WP_002011865.1 hypothetical protein -
  DN409_RS07950 (DN409_07950) - 1523861..1524205 (+) 345 WP_002011864.1 YppE family protein -
  DN409_RS07955 (DN409_07955) - 1524231..1524422 (-) 192 WP_002030817.1 YppF family protein -
  DN409_RS07960 (DN409_07960) - 1524600..1525238 (+) 639 WP_002086577.1 YppG family protein -
  DN409_RS07965 (DN409_07965) - 1525395..1525844 (+) 450 WP_061688856.1 CotD family spore coat protein -
  DN409_RS07970 (DN409_07970) - 1525901..1526455 (+) 555 WP_002030808.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23346.65 Da        Isoelectric Point: 9.7634

>NTDB_id=303209 DN409_RS07935 WP_061688855.1 1521263..1521865(-) (recU) [Bacillus mycoides strain BPN401]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIKEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=303209 DN409_RS07935 WP_061688855.1 1521263..1521865(-) (recU) [Bacillus mycoides strain BPN401]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCATCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAAAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62

100

0.62

Multiple sequence alignment