Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DN407_RS19740 Genome accession   NZ_CP031068
Coordinates   3834475..3834933 (+) Length   152 a.a.
NCBI ID   WP_000804862.1    Uniprot ID   -
Organism   Bacillus sp. JAS24-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3829475..3839933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN407_RS19725 (DN407_19760) - 3830145..3830381 (+) 237 WP_000283738.1 hypothetical protein -
  DN407_RS19730 (DN407_19765) - 3830542..3832650 (-) 2109 WP_000421677.1 polyphosphate kinase -
  DN407_RS19735 (DN407_19770) - 3832759..3834333 (-) 1575 WP_050552234.1 Ppx/GppA family phosphatase -
  DN407_RS19740 (DN407_19775) kre 3834475..3834933 (+) 459 WP_000804862.1 YkyB family protein Regulator
  DN407_RS19745 (DN407_19780) - 3834965..3835627 (-) 663 WP_149216604.1 YkyA family protein -
  DN407_RS19750 (DN407_19785) - 3836242..3836895 (-) 654 WP_000680811.1 diguanylate cyclase -
  DN407_RS19755 (DN407_19790) - 3837059..3837292 (+) 234 WP_000939446.1 SPP1 phage holin family protein -
  DN407_RS19760 (DN407_19795) - 3837324..3837824 (-) 501 WP_000708120.1 hypothetical protein -
  DN407_RS19765 (DN407_19800) - 3838238..3839779 (+) 1542 WP_000449898.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=303168 DN407_RS19740 WP_000804862.1 3834475..3834933(+) (kre) [Bacillus sp. JAS24-2]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTIQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=303168 DN407_RS19740 WP_000804862.1 3834475..3834933(+) (kre) [Bacillus sp. JAS24-2]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTGGCAAAAAAAACAATTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487

Multiple sequence alignment