Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DN407_RS11645 Genome accession   NZ_CP031068
Coordinates   2227872..2228150 (+) Length   92 a.a.
NCBI ID   WP_097797147.1    Uniprot ID   -
Organism   Bacillus sp. JAS24-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2222872..2233150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN407_RS11625 (DN407_11640) - 2224548..2225357 (+) 810 WP_000678509.1 papain-like cysteine protease family protein -
  DN407_RS11630 (DN407_11645) - 2225383..2225985 (+) 603 WP_000517260.1 hypothetical protein -
  DN407_RS11635 (DN407_11650) - 2226225..2226476 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  DN407_RS11640 (DN407_11655) - 2226853..2227731 (+) 879 WP_000397984.1 helix-turn-helix domain-containing protein -
  DN407_RS11645 (DN407_11660) abrB 2227872..2228150 (+) 279 WP_097797147.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DN407_RS11650 (DN407_11665) - 2228672..2229922 (+) 1251 WP_097797146.1 hypothetical protein -
  DN407_RS11655 (DN407_11670) - 2229990..2230748 (+) 759 WP_149216264.1 TSUP family transporter -
  DN407_RS11660 (DN407_11675) - 2231002..2231661 (+) 660 WP_000682538.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10348.29 Da        Isoelectric Point: 10.2612

>NTDB_id=303162 DN407_RS11645 WP_097797147.1 2227872..2228150(+) (abrB) [Bacillus sp. JAS24-2]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGVISDSNVSLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=303162 DN407_RS11645 WP_097797147.1 2227872..2228150(+) (abrB) [Bacillus sp. JAS24-2]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGTTATTTCAGACAGCAATGTTTCGTTAGCGAATGGGAAGATTATCGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment