Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DN407_RS09530 Genome accession   NZ_CP031068
Coordinates   1822281..1822568 (+) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus sp. JAS24-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1817281..1827568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN407_RS09510 (DN407_09515) - 1818455..1818652 (+) 198 WP_001048102.1 DUF4083 domain-containing protein -
  DN407_RS09515 (DN407_09520) - 1818685..1819146 (+) 462 WP_149216198.1 NUDIX hydrolase -
  DN407_RS09520 (DN407_09525) nadE 1819196..1820014 (-) 819 WP_000174891.1 ammonia-dependent NAD(+) synthetase -
  DN407_RS09525 (DN407_09530) - 1820284..1822164 (+) 1881 WP_098295026.1 ABC transporter permease -
  DN407_RS09530 (DN407_09535) abrB 1822281..1822568 (+) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DN407_RS09535 (DN407_09540) - 1822843..1823790 (+) 948 WP_098295024.1 serine protease -
  DN407_RS09540 (DN407_09545) - 1823838..1824176 (+) 339 Protein_1783 MFS transporter permease -
  DN407_RS32735 (DN407_09550) - 1824225..1824431 (+) 207 WP_001101742.1 hypothetical protein -
  DN407_RS09550 (DN407_09555) - 1824471..1824695 (-) 225 WP_000162602.1 hypothetical protein -
  DN407_RS09555 (DN407_09560) - 1824780..1825127 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  DN407_RS09560 (DN407_09565) - 1825324..1825826 (+) 503 Protein_1787 DinB family protein -
  DN407_RS09565 (DN407_09570) rsgA 1826009..1827061 (+) 1053 WP_098507711.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=303160 DN407_RS09530 WP_000648325.1 1822281..1822568(+) (abrB) [Bacillus sp. JAS24-2]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=303160 DN407_RS09530 WP_000648325.1 1822281..1822568(+) (abrB) [Bacillus sp. JAS24-2]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGCATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment