Detailed information NTG0303133

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: DN405_RS25565
• Genome accession: NZ_CP031065
• Coordinates: 4916940..4918289 (-)
• Length: 449 a.a.
• NCBI ID: WP_149150047.1
• Uniprot ID: -
• Organism: Bacillus sp. SH8-8
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4911940..4923289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DN405_RS25545 (DN405_25530)	secA	4912265..4914772 (-)	2508	WP_000579387.1	preprotein translocase subunit SecA	-
DN405_RS25550 (DN405_25535)	raiA	4915047..4915589 (-)	543	WP_000671185.1	ribosome-associated translation inhibitor RaiA	-
DN405_RS25555 (DN405_25540)	cspC	4915912..4916109 (-)	198	WP_001990088.1	cold shock protein CspC	-
DN405_RS25560 (DN405_25545)	-	4916236..4916940 (-)	705	WP_033666421.1	ComF family protein	-
DN405_RS25565 (DN405_25550)	comFA	4916940..4918289 (-)	1350	WP_149150047.1	ATP-dependent helicase ComFA	Machinery gene
DN405_RS25570 (DN405_25555)	-	4918417..4919829 (-)	1413	WP_044306533.1	C40 family peptidase	-
DN405_RS25575 (DN405_25560)	-	4919984..4920298 (-)	315	WP_000400857.1	helix-turn-helix domain-containing protein	-
DN405_RS25580 (DN405_25565)	-	4920471..4921313 (-)	843	WP_000684725.1	DegV family protein	-
DN405_RS25585 (DN405_25570)	-	4921550..4922185 (+)	636	WP_000926672.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51020.81 Da
• Isoelectric Point: 9.9653

>NTDB_id=303133 DN405_RS25565 WP_149150047.1 4916940..4918289(-) (comFA) [Bacillus sp. SH8-8]
MVAGKQLLLEELSSDLQRKLNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYSAFHVIVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLNRERIPRVLLQWLKMHLNKKYPVFL
FVPHVRYIEEISSLLKSLHNKVEGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=303133 DN405_RS25565 WP_149150047.1 4916940..4918289(-) (comFA) [Bacillus sp. SH8-8]
ATGGTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGAAATTAAACGATTTGAAAAAGAAGGG
AGAGATTGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGTGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACGGATGTTGTTTTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTAGATAAAGAAAAAGATGCAGTATTAGTCGTTGCGACCACGCATCAATTATTACGTTATTATAGTGCGTTTC
ATGTCATAGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCGTTGCCAGTTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GCCTCAACCGTGAAAGAATTCCTCGAGTTTTACTACAATGGTTAAAGATGCACTTAAACAAAAAGTATCCTGTTTTTTTA
TTCGTTCCCCATGTACGATATATAGAAGAAATAAGCTCGTTATTGAAATCATTGCATAATAAAGTTGAAGGGGTACATGC
AGAAGATCCGATGAGAAAAGAGAAAGTCGCAGCGTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (312-408)

• Type III restriction enzyme, res subunit (ResIII) (107-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	52.871	93.096	0.492