Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   DN405_RS20525 Genome accession   NZ_CP031065
Coordinates   3984121..3984915 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus sp. SH8-8     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3979121..3989915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN405_RS20500 (DN405_20475) - 3979647..3981719 (-) 2073 WP_033666632.1 sigma-54-dependent Fis family transcriptional regulator -
  DN405_RS20505 (DN405_20480) - 3981857..3982090 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  DN405_RS20510 (DN405_20485) - 3982140..3982868 (-) 729 WP_149149910.1 glycerophosphodiester phosphodiesterase -
  DN405_RS20515 (DN405_20490) - 3982919..3983065 (+) 147 WP_001247671.1 YycC family protein -
  DN405_RS20520 (DN405_20495) - 3983305..3983868 (-) 564 WP_000428229.1 PRK06770 family protein -
  DN405_RS20525 (DN405_20500) spo0A 3984121..3984915 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  DN405_RS20535 (DN405_20510) spoIVB 3985206..3986504 (-) 1299 WP_002024767.1 SpoIVB peptidase -
  DN405_RS20540 (DN405_20515) recN 3986623..3988362 (-) 1740 WP_000947767.1 DNA repair protein RecN Machinery gene
  DN405_RS20545 (DN405_20520) argR 3988627..3989076 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=303120 DN405_RS20525 WP_011110369.1 3984121..3984915(-) (spo0A) [Bacillus sp. SH8-8]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=303120 DN405_RS20525 WP_011110369.1 3984121..3984915(-) (spo0A) [Bacillus sp. SH8-8]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAAAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTCGGGCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAGCGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAATGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACCACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment