Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DN405_RS19615 Genome accession   NZ_CP031065
Coordinates   3822983..3823441 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus sp. SH8-8     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3817983..3828441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN405_RS19600 (DN405_19580) - 3818652..3818888 (+) 237 WP_000283738.1 hypothetical protein -
  DN405_RS19605 (DN405_19585) - 3819050..3821158 (-) 2109 WP_000421680.1 polyphosphate kinase -
  DN405_RS19610 (DN405_19590) ppx 3821267..3822841 (-) 1575 WP_002024754.1 exopolyphosphatase -
  DN405_RS19615 (DN405_19595) kre 3822983..3823441 (+) 459 WP_000804864.1 YkyB family protein Regulator
  DN405_RS19620 (DN405_19600) - 3823473..3824135 (-) 663 WP_000922498.1 YkyA family protein -
  DN405_RS19625 (DN405_19605) - 3824750..3825403 (-) 654 WP_149149899.1 diguanylate cyclase -
  DN405_RS19630 (DN405_19610) - 3825567..3825800 (+) 234 WP_000939448.1 SPP1 phage holin family protein -
  DN405_RS19635 (DN405_19615) - 3825832..3826332 (-) 501 WP_000708120.1 hypothetical protein -
  DN405_RS19640 (DN405_19620) - 3826745..3828286 (+) 1542 WP_000449912.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=303118 DN405_RS19615 WP_000804864.1 3822983..3823441(+) (kre) [Bacillus sp. SH8-8]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=303118 DN405_RS19615 WP_000804864.1 3822983..3823441(+) (kre) [Bacillus sp. SH8-8]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTGCATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AAGAAAAAAAATTAAGTGAGCCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment