Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DN405_RS11820 Genome accession   NZ_CP031065
Coordinates   2271337..2271615 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus sp. SH8-8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2266337..2276615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN405_RS11800 (DN405_11785) - 2268010..2268819 (+) 810 WP_000664544.1 papain-like cysteine protease family protein -
  DN405_RS11805 (DN405_11790) - 2268845..2269447 (+) 603 WP_149149582.1 hypothetical protein -
  DN405_RS11810 (DN405_11795) - 2269691..2269942 (-) 252 WP_149149583.1 LuxR C-terminal-related transcriptional regulator -
  DN405_RS11815 (DN405_11800) - 2270319..2271196 (+) 878 Protein_2230 helix-turn-helix domain-containing protein -
  DN405_RS11820 (DN405_11805) abrB 2271337..2271615 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DN405_RS11825 (DN405_11810) - 2272136..2273386 (+) 1251 WP_149149584.1 hypothetical protein -
  DN405_RS11830 (DN405_11815) - 2273454..2274212 (+) 759 WP_149149585.1 TSUP family transporter -
  DN405_RS11835 (DN405_11820) - 2274466..2275125 (+) 660 WP_149149586.1 CatB-related O-acetyltransferase -
  DN405_RS11840 (DN405_11825) - 2275327..2275575 (+) 249 Protein_2235 acyltransferase -
  DN405_RS11845 (DN405_11830) - 2275743..2276333 (+) 591 WP_000265875.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=303112 DN405_RS11820 WP_000842216.1 2271337..2271615(+) (abrB) [Bacillus sp. SH8-8]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=303112 DN405_RS11820 WP_000842216.1 2271337..2271615(+) (abrB) [Bacillus sp. SH8-8]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment