Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DN405_RS09600 Genome accession   NZ_CP031065
Coordinates   1843978..1844265 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus sp. SH8-8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838978..1849265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN405_RS09580 (DN405_09560) - 1840152..1840349 (+) 198 WP_001048091.1 DUF4083 domain-containing protein -
  DN405_RS09585 (DN405_09565) - 1840381..1840842 (+) 462 WP_000024999.1 NUDIX hydrolase -
  DN405_RS09590 (DN405_09570) nadE 1840892..1841710 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  DN405_RS09595 (DN405_09575) - 1841981..1843861 (+) 1881 WP_006929553.1 ABC transporter permease -
  DN405_RS09600 (DN405_09580) abrB 1843978..1844265 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DN405_RS09605 (DN405_09585) - 1844541..1845488 (+) 948 WP_149149518.1 serine protease -
  DN405_RS09610 (DN405_09590) - 1845530..1845877 (+) 348 Protein_1787 MFS transporter -
  DN405_RS28690 (DN405_09595) - 1845926..1846132 (+) 207 WP_001101741.1 hypothetical protein -
  DN405_RS09620 (DN405_09600) - 1846276..1846638 (+) 363 WP_001198796.1 DUF805 domain-containing protein -
  DN405_RS09625 (DN405_09605) - 1846838..1847062 (-) 225 WP_000162602.1 hypothetical protein -
  DN405_RS09630 (DN405_09610) - 1847147..1847494 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  DN405_RS09635 (DN405_09615) - 1847691..1848218 (+) 528 WP_086388639.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=303110 DN405_RS09600 WP_000648324.1 1843978..1844265(+) (abrB) [Bacillus sp. SH8-8]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=303110 DN405_RS09600 WP_000648324.1 1843978..1844265(+) (abrB) [Bacillus sp. SH8-8]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment