Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DN405_RS07675 Genome accession   NZ_CP031065
Coordinates   1459262..1459864 (-) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus sp. SH8-8     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1454262..1464864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN405_RS07655 (DN405_07635) dnaD 1454584..1455291 (+) 708 WP_000728542.1 DNA replication protein DnaD -
  DN405_RS07660 (DN405_07640) nth 1455307..1455954 (+) 648 WP_000933030.1 endonuclease III -
  DN405_RS07665 (DN405_07645) - 1455958..1456476 (+) 519 WP_016122187.1 YpoC family protein -
  DN405_RS07670 (DN405_07650) - 1456502..1459195 (-) 2694 WP_016122188.1 PBP1A family penicillin-binding protein -
  DN405_RS07675 (DN405_07655) recU 1459262..1459864 (-) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  DN405_RS07680 (DN405_07660) - 1459968..1460993 (+) 1026 WP_000495661.1 DUF2515 domain-containing protein -
  DN405_RS28680 - 1461145..1461324 (-) 180 WP_001987054.1 hypothetical protein -
  DN405_RS07685 (DN405_07665) - 1461410..1461652 (+) 243 WP_001252036.1 hypothetical protein -
  DN405_RS07690 (DN405_07670) - 1461668..1462012 (+) 345 WP_000786939.1 YppE family protein -
  DN405_RS07695 (DN405_07675) - 1462039..1462230 (-) 192 WP_000242652.1 YppF family protein -
  DN405_RS07700 (DN405_07680) - 1462408..1462971 (+) 564 WP_016122190.1 YppG family protein -
  DN405_RS07705 (DN405_07685) - 1463127..1463558 (+) 432 WP_000546272.1 CotD family spore coat protein -
  DN405_RS07710 (DN405_07690) - 1463615..1464169 (+) 555 WP_000862908.1 DUF1273 domain-containing protein -
  DN405_RS07715 (DN405_07695) gpsB 1464267..1464602 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=303109 DN405_RS07675 WP_000155598.1 1459262..1459864(-) (recU) [Bacillus sp. SH8-8]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=303109 DN405_RS07675 WP_000155598.1 1459262..1459864(-) (recU) [Bacillus sp. SH8-8]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment