Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DN405_RS06370 Genome accession   NZ_CP031065
Coordinates   1217419..1217742 (-) Length   107 a.a.
NCBI ID   WP_000578884.1    Uniprot ID   A0A9W5R9C5
Organism   Bacillus sp. SH8-8     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1212419..1222742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN405_RS06345 (DN405_06330) - 1212772..1214058 (+) 1287 WP_069604300.1 D-alanyl-D-alanine carboxypeptidase family protein -
  DN405_RS06350 (DN405_06335) - 1214249..1214818 (+) 570 WP_000767792.1 signal peptidase I -
  DN405_RS06355 (DN405_06340) - 1214879..1215466 (+) 588 WP_000172852.1 CalY family protein -
  DN405_RS06360 (DN405_06345) - 1215601..1216380 (+) 780 WP_025709887.1 DUF4047 domain-containing protein -
  DN405_RS06365 (DN405_06350) calY 1216759..1217352 (+) 594 WP_000053714.1 biofilm matrix protein CalY -
  DN405_RS06370 (DN405_06355) sinR 1217419..1217742 (-) 324 WP_000578884.1 helix-turn-helix domain-containing protein Regulator
  DN405_RS06375 (DN405_06360) - 1217822..1217956 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  DN405_RS06380 (DN405_06365) inhA1 1218299..1220689 (+) 2391 WP_001035937.1 M6 family metalloprotease immune inhibitor InhA1 -
  DN405_RS06385 (DN405_06370) - 1220861..1222228 (+) 1368 WP_000028370.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12335.17 Da        Isoelectric Point: 9.6244

>NTDB_id=303107 DN405_RS06370 WP_000578884.1 1217419..1217742(-) (sinR) [Bacillus sp. SH8-8]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=303107 DN405_RS06370 WP_000578884.1 1217419..1217742(-) (sinR) [Bacillus sp. SH8-8]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAATTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment