Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DN405_RS00225 Genome accession   NZ_CP031065
Coordinates   40330..40614 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. SH8-8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35330..45614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN405_RS00190 (DN405_00190) tmk 35522..36148 (+) 627 WP_000677218.1 dTMP kinase -
  DN405_RS00195 (DN405_00195) holB 36184..37167 (+) 984 WP_000169561.1 DNA polymerase III subunit delta' -
  DN405_RS00200 (DN405_00200) - 37173..38000 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  DN405_RS00205 (DN405_00205) yabA 38015..38365 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  DN405_RS00210 (DN405_00210) - 38448..39188 (+) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DN405_RS00215 (DN405_00215) - 39175..39465 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  DN405_RS00220 (DN405_00220) rsmI 39434..40309 (+) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DN405_RS00225 (DN405_00225) abrB 40330..40614 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DN405_RS00230 (DN405_00230) metG 41073..43082 (+) 2010 WP_071732546.1 methionine--tRNA ligase -
  DN405_RS00235 (DN405_00235) - 43249..44016 (+) 768 WP_006915843.1 TatD family hydrolase -
  DN405_RS00240 (DN405_00240) rnmV 44231..44788 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=303091 DN405_RS00225 WP_000843036.1 40330..40614(-) (abrB) [Bacillus sp. SH8-8]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=303091 DN405_RS00225 WP_000843036.1 40330..40614(-) (abrB) [Bacillus sp. SH8-8]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment