Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ETT49_RS04520 Genome accession   NZ_CP035450
Coordinates   879029..880099 (-) Length   356 a.a.
NCBI ID   WP_136058666.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm93.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 874029..885099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT49_RS04500 (ETT49_04495) citX 874599..875177 (+) 579 WP_002991773.1 citrate lyase holo-[acyl-carrier protein] synthase -
  ETT49_RS04505 (ETT49_04500) - 875192..876586 (+) 1395 WP_002991774.1 oxaloacetate decarboxylase subunit alpha -
  ETT49_RS04510 (ETT49_04505) citC 876697..877749 (-) 1053 WP_030126672.1 [citrate (pro-3S)-lyase] ligase -
  ETT49_RS04515 (ETT49_04510) - 877838..878320 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  ETT49_RS04520 (ETT49_04515) xerS 879029..880099 (-) 1071 WP_136058666.1 tyrosine recombinase XerS Machinery gene
  ETT49_RS04525 (ETT49_04520) - 880569..881267 (+) 699 WP_002993300.1 S24 family peptidase -
  ETT49_RS04530 (ETT49_04525) ffh 881402..882964 (-) 1563 WP_002993302.1 signal recognition particle protein -
  ETT49_RS04535 (ETT49_04530) - 882979..883311 (-) 333 WP_002989745.1 putative DNA-binding protein -
  ETT49_RS04540 (ETT49_04535) - 883409..884107 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41418.52 Da        Isoelectric Point: 9.3952

>NTDB_id=303076 ETT49_RS04520 WP_136058666.1 879029..880099(-) (xerS) [Streptococcus pyogenes strain emm93.4]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRCYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=303076 ETT49_RS04520 WP_136058666.1 879029..880099(-) (xerS) [Streptococcus pyogenes strain emm93.4]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATATAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGTCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGATGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803