Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ETT50_RS04550 Genome accession   NZ_CP035449
Coordinates   877585..878655 (+) Length   356 a.a.
NCBI ID   WP_032464390.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 872585..883655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT50_RS04530 (ETT50_04530) - 873598..874296 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  ETT50_RS04535 (ETT50_04535) - 874394..874726 (+) 333 WP_002989745.1 putative DNA-binding protein -
  ETT50_RS04540 (ETT50_04540) ffh 874741..876303 (+) 1563 WP_032465029.1 signal recognition particle protein -
  ETT50_RS04545 (ETT50_04545) - 876420..877117 (-) 698 Protein_817 helix-turn-helix transcriptional regulator -
  ETT50_RS04550 (ETT50_04550) xerS 877585..878655 (+) 1071 WP_032464390.1 tyrosine recombinase XerS Machinery gene
  ETT50_RS04555 (ETT50_04555) - 879355..879837 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  ETT50_RS04560 (ETT50_04560) citC 879926..880978 (+) 1053 WP_032465028.1 [citrate (pro-3S)-lyase] ligase -
  ETT50_RS04565 (ETT50_04565) - 881088..882482 (-) 1395 WP_032465027.1 oxaloacetate decarboxylase subunit alpha -
  ETT50_RS04570 (ETT50_04570) citX 882497..883075 (-) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.62 Da        Isoelectric Point: 9.5552

>NTDB_id=302991 ETT50_RS04550 WP_032464390.1 877585..878655(+) (xerS) [Streptococcus pyogenes strain emm56]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDVT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=302991 ETT50_RS04550 WP_032464390.1 877585..878655(+) (xerS) [Streptococcus pyogenes strain emm56]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGTTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803