Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   DUN60_RS22865 Genome accession   NZ_CP031056
Coordinates   1645069..1646163 (-) Length   364 a.a.
NCBI ID   WP_114635558.1    Uniprot ID   -
Organism   Vibrio splendidus strain Vibrio sp     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1640069..1651163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS22845 - 1640810..1641118 (+) 309 WP_114635555.1 cysteine-rich CWC family protein -
  DUN60_RS22850 - 1641234..1641584 (-) 351 WP_017082477.1 HopJ type III effector protein -
  DUN60_RS22855 - 1641779..1642438 (+) 660 WP_114635556.1 PilZ domain-containing protein -
  DUN60_RS22860 luxQ 1642487..1645069 (-) 2583 WP_114635557.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  DUN60_RS22865 luxP 1645069..1646163 (-) 1095 WP_114635558.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  DUN60_RS22870 - 1646471..1646785 (-) 315 WP_065205876.1 GIY-YIG nuclease family protein -
  DUN60_RS22875 - 1646786..1647442 (-) 657 WP_054547119.1 YceH family protein -
  DUN60_RS22880 - 1647506..1647706 (-) 201 WP_004730052.1 hypothetical protein -
  DUN60_RS22885 - 1647902..1648216 (+) 315 WP_004730049.1 DUF496 family protein -
  DUN60_RS22890 - 1648429..1649055 (+) 627 WP_004730047.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  DUN60_RS22895 - 1649220..1649456 (+) 237 WP_004730045.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41192.45 Da        Isoelectric Point: 6.1089

>NTDB_id=302989 DUN60_RS22865 WP_114635558.1 1645069..1646163(-) (luxP) [Vibrio splendidus strain Vibrio sp]
MKRLLMLFGLAVFSASALSHGTHVLNGYWEYQDYLSNFPEQKALTDKMVEAVQNHPVPLRRVQDRPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRIRYQINQVFTRVNADVSQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLNSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLANYFKEVSQPASKYSVLYYSQGYISDARGDTFIHEVNTGTHFDLKSSFYTRSD
KESGYQAAKISIANDKDLDFIYACSTDVALGAVEAIRESGRDILVNGWGGGSAELEAIAGGDLDVTVMRMNDDTGIAMAE
AIKWDLAGLKVPTVYSGEFEVVTKEDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=302989 DUN60_RS22865 WP_114635558.1 1645069..1646163(-) (luxP) [Vibrio splendidus strain Vibrio sp]
ATGAAACGTTTATTGATGTTGTTTGGACTTGCCGTATTTTCTGCGTCCGCTCTCTCCCATGGTACTCATGTCCTCAATGG
GTACTGGGAATACCAAGATTATCTTTCCAACTTTCCAGAACAAAAAGCACTGACCGATAAAATGGTCGAAGCTGTGCAAA
ATCATCCTGTGCCATTGAGACGAGTTCAAGACAGGCCTATTACGATTTCAGTCGTGTATCCGGGTCAACAGATCTCTGAT
TATTGGGTTCGTAATATCCAAGCTTTTGAGAAACGTCTCGATAAGCTGAGAATTCGATATCAAATTAACCAAGTGTTTAC
ACGTGTAAATGCAGATGTCTCTCAACAGAGCATTTCTTTGCAAGAGGCGATTGAAAACAAGACGGACTATCTGATTTTTA
CGTTAGATACGACGCGTCATCGCAAGTTTATTGAGCACGTGTTGAATTCTACTGACACCAAACTGATTCTTCAAAATATT
ACGACCCCAGTCCGAGCGTGGGCCGATAGACAGCCATTCATGTATGTGGGTTTTGATCATGCGACCGGTAGTTTGAAACT
TGCAAATTATTTTAAAGAAGTTAGCCAACCAGCCAGTAAGTATTCTGTTTTATACTATTCGCAAGGTTACATCAGTGATG
CGCGTGGAGATACCTTTATCCATGAAGTGAATACCGGTACTCATTTTGATCTTAAGTCTTCGTTCTACACAAGATCTGAT
AAAGAAAGTGGTTATCAAGCGGCTAAAATCAGCATAGCGAACGATAAGGATCTAGACTTTATCTATGCGTGTTCAACCGA
TGTCGCTTTGGGCGCAGTAGAAGCCATTCGTGAATCTGGTCGAGATATCTTAGTTAATGGCTGGGGAGGCGGATCCGCTG
AACTTGAAGCCATTGCAGGGGGCGACCTAGATGTCACTGTTATGCGCATGAATGACGATACCGGTATCGCTATGGCAGAG
GCAATAAAGTGGGATCTAGCCGGATTGAAAGTTCCTACCGTTTACTCTGGCGAATTTGAAGTAGTGACCAAGGAAGATTC
TCCAGAACGTATTTCAGAACTTAAGCAGCGAGCATTTAGGTACTCAGGCCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.842

100

0.632

Multiple sequence alignment