Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   DUN60_RS13100 Genome accession   NZ_CP031055
Coordinates   2936094..2937098 (+) Length   334 a.a.
NCBI ID   WP_004729690.1    Uniprot ID   A0A7W4CDV7
Organism   Vibrio splendidus strain Vibrio sp     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2931094..2942098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS13085 - 2931480..2932769 (-) 1290 WP_054548226.1 malic enzyme-like NAD(P)-binding protein -
  DUN60_RS13090 rpmE 2933101..2933319 (-) 219 WP_004729688.1 50S ribosomal protein L31 -
  DUN60_RS13095 priA 2933652..2935853 (+) 2202 WP_114634076.1 primosomal protein N' -
  DUN60_RS13100 cytR 2936094..2937098 (+) 1005 WP_004729690.1 DNA-binding transcriptional regulator CytR Regulator
  DUN60_RS13105 ftsN 2937221..2937760 (+) 540 WP_029222060.1 cell division protein FtsN -
  DUN60_RS13110 hslV 2937989..2938537 (+) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  DUN60_RS13115 hslU 2938596..2939936 (+) 1341 WP_004729693.1 HslU--HslV peptidase ATPase subunit -
  DUN60_RS13120 - 2940092..2941009 (+) 918 WP_114634077.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  DUN60_RS13125 rraA 2941083..2941601 (+) 519 WP_004729695.1 ribonuclease E activity regulator RraA -
  DUN60_RS13130 zapB 2941714..2941956 (-) 243 WP_004729696.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36557.09 Da        Isoelectric Point: 6.4911

>NTDB_id=302979 DUN60_RS13100 WP_004729690.1 2936094..2937098(+) (cytR) [Vibrio splendidus strain Vibrio sp]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTTATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=302979 DUN60_RS13100 WP_004729690.1 2936094..2937098(+) (cytR) [Vibrio splendidus strain Vibrio sp]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACGGCAACAGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCTACTCGTAAACGAGTTGAGACAGCAGTGCTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAATT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTACTTCGCCGAAATCATTCGTGGT
ATCGAAGATGCCGCTGTAGAGAATGACTACCTCGTTCTACTGGGTGACAGTGGTCAACAAAAGAAGCGTGAGTCTTCATT
TGTTAACTTGGTCTTCACAAAGCAAGCAGACGGTATGCTACTGCTTGGCACTGATCATCCGTTTGATGTCAGTAAGCCTG
AGCAAAAGAATTTACCGCCAATGGTTATGGCGTGTGAATTCGCACCTGAGCTTGAACTGCCAACGGTTCACATCGACAAC
CTAACCTCTGCATTTGAAGCGGTGAATTACCTCGCTCAGTTAGGTCATAAGCGCATCGCTCAAATCTCTGGGCCAACGAC
TGCAACCCTGTGTAAGTTCCGTCAACAAGGCTACCAACAAGCATTGCGCCGCGCTGGAGTATCAATGAACCCAGCTTACA
GCACTGTGGGTGATTTCACCTTTGAAGCGGGTGCGCAAGCGGTTCGTCAATTACTAGCACTTCCTGAACAACCTACAGCG
ATCTTCTGTCATAACGATGCGATGGCGATTGGTGCGATTCAAGAAGCGAAGAAGCTAGGTTTACGTGTTCCTCAAGACCT
ATCGATTGTTGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACTATTTCTCAGCCTCGTTATG
AGATTGGACGCCAAGCGATGCTGATGATGCTTGATCTATTGAAGGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCTAAATTAGTCGTTAGAGGCAGCACCGCACCACCTCGAATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4CDV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.759

99.401

0.892
  cytR Vibrio parahaemolyticus RIMD 2210633

87.988

99.701

0.877

Multiple sequence alignment