Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ETT50_RS02175 Genome accession   NZ_CP035449
Coordinates   411090..412124 (+) Length   344 a.a.
NCBI ID   WP_032465183.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm56     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 406090..417124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT50_RS02145 (ETT50_02145) tsaE 407164..407625 (+) 462 WP_023609939.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ETT50_RS02150 (ETT50_02150) - 407600..408124 (+) 525 WP_032465186.1 GNAT family N-acetyltransferase -
  ETT50_RS02155 (ETT50_02155) - 408133..409407 (+) 1275 WP_020837594.1 biofilm formation/cell division transcriptional regulator BrpA -
  ETT50_RS02160 (ETT50_02160) - 409518..409874 (-) 357 WP_032465185.1 hypothetical protein -
  ETT50_RS02165 (ETT50_02165) - 409871..410290 (-) 420 WP_002983376.1 HIT family protein -
  ETT50_RS02170 (ETT50_02170) pptA 410362..411087 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  ETT50_RS02175 (ETT50_02175) pptB 411090..412124 (+) 1035 WP_032465183.1 ABC transporter permease Regulator
  ETT50_RS02180 (ETT50_02180) ccrZ 412188..412979 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  ETT50_RS02185 (ETT50_02185) trmB 412979..413614 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ETT50_RS02195 (ETT50_02195) rimP 413873..414409 (+) 537 WP_002988815.1 ribosome maturation factor RimP -
  ETT50_RS02200 (ETT50_02200) nusA 414584..415741 (+) 1158 WP_002988817.1 transcription termination factor NusA -
  ETT50_RS02205 (ETT50_02205) rnpM 415757..416053 (+) 297 WP_002983486.1 RNase P modulator RnpM -
  ETT50_RS02210 (ETT50_02210) - 416046..416348 (+) 303 WP_002983488.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40332.55 Da        Isoelectric Point: 10.3254

>NTDB_id=302966 ETT50_RS02175 WP_032465183.1 411090..412124(+) (pptB) [Streptococcus pyogenes strain emm56]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLDLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=302966 ETT50_RS02175 WP_032465183.1 411090..412124(+) (pptB) [Streptococcus pyogenes strain emm56]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTTTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGACTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427


Multiple sequence alignment