Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DUN60_RS11655 Genome accession   NZ_CP031055
Coordinates   2669971..2670489 (-) Length   172 a.a.
NCBI ID   WP_017079953.1    Uniprot ID   A0A2J6U6Q3
Organism   Vibrio splendidus strain Vibrio sp     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2664971..2675489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS11635 rpsP 2665516..2665764 (-) 249 WP_004735508.1 30S ribosomal protein S16 -
  DUN60_RS11640 ffh 2665977..2667371 (-) 1395 WP_004735506.1 signal recognition particle protein -
  DUN60_RS11645 - 2667572..2668366 (+) 795 WP_017079954.1 inner membrane protein YpjD -
  DUN60_RS11650 - 2668494..2669765 (+) 1272 WP_004735502.1 CNNM domain-containing protein -
  DUN60_RS11655 luxS 2669971..2670489 (-) 519 WP_017079953.1 S-ribosylhomocysteine lyase Regulator
  DUN60_RS11660 - 2670514..2671164 (-) 651 WP_029406196.1 hypothetical protein -
  DUN60_RS11665 gshA 2671175..2672743 (-) 1569 WP_114634001.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18936.61 Da        Isoelectric Point: 4.4820

>NTDB_id=302966 DUN60_RS11655 WP_017079953.1 2669971..2670489(-) (luxS) [Vibrio splendidus strain Vibrio sp]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=302966 DUN60_RS11655 WP_017079953.1 2669971..2670489(-) (luxS) [Vibrio splendidus strain Vibrio sp]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACGCGCATGAACGCACCTGCAGTTCGTGTAGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATTCTATCTGAGAAAGGTATCC
ATACTCTAGAGCACCTATACGCAGGATTTATGCGTAATCAATTGAACGGTTCGGATGTGGAGATCATCGATATTTCACCG
ATGGGTTGTCGTACTGGTTTCTACATGAGCCTAATTGGTACGCCTTCAGAGCAGCAAGTGGCAGACGGTTGGTTGGCTGC
AATGCAAGATGTGCTGAAAGTTGAGAATCAAAATAAGATCCCTGAACTGAACGAATACCAATGTGGTACTGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGATATCGCCAACGCGATCATTGCTGCTGGTATCTCTGTAAACAAAAATGATGAACTGGCA
TTGCCAGAGTCTATGCTGCAAGAGCTTAAGATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J6U6Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment