Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DTQ70_RS04575 Genome accession   NZ_CP031030
Coordinates   1087939..1089306 (-) Length   455 a.a.
NCBI ID   WP_028522199.1    Uniprot ID   -
Organism   Runella sp. SP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1082939..1094306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTQ70_RS04560 (DTQ70_04560) - 1083898..1085619 (-) 1722 WP_409050436.1 alpha-amylase family protein -
  DTQ70_RS04565 (DTQ70_04565) - 1085779..1086882 (+) 1104 WP_122929717.1 glycosyltransferase -
  DTQ70_RS04570 (DTQ70_04570) - 1086894..1087913 (-) 1020 WP_122929718.1 formylglycine-generating enzyme family protein -
  DTQ70_RS04575 (DTQ70_04575) radA 1087939..1089306 (-) 1368 WP_028522199.1 DNA repair protein RadA Machinery gene
  DTQ70_RS04580 (DTQ70_04580) - 1089354..1089524 (-) 171 WP_122929719.1 DpnD/PcfM family protein -
  DTQ70_RS04585 (DTQ70_04585) - 1089511..1090290 (-) 780 WP_122929720.1 DpnI domain-containing protein -
  DTQ70_RS04590 (DTQ70_04590) - 1090418..1091704 (-) 1287 WP_122929721.1 citrate synthase -
  DTQ70_RS04595 (DTQ70_04595) - 1091882..1093153 (-) 1272 WP_122929722.1 amidohydrolase family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50061.52 Da        Isoelectric Point: 6.3736

>NTDB_id=302919 DTQ70_RS04575 WP_028522199.1 1087939..1089306(-) (radA) [Runella sp. SP2]
MAKVKTAYFCQNCGHQATKWMGRCPSCGEWNTLVEEVIEKEDKKGPLAQWKSVSLAPKPKAINEIKYEEEPRIVTSDAEL
NRVLGGGIVLGSLVLIGGEPGIGKSTLMLQIALTLTQKVLYVSGEESESQIKMRAERLSSKNNNCFILTETSTDNIFRQI
EEFDPDVLIIDSIQTMQSSLIESGAGSVSQVRQCAAELMKYAKESGVPVFMIGHITKDGNLAGPKTLEHMVDTVLQFEGD
RHTTYRILRTTKNRFGSTSELGIYEMLGSGLRQVTNPSEILISQREEHLSGITIGSMLEGNRPLKIEIQSLVSVANYGTP
QRSSTGFDNKRLQMLLAVLEKRGGFRLGTQDVFLNVAGGLRVEDPAIDLAVVTSLASSYEDSYVPPSICFAGEVGLGGEV
RAVNRIEGRIAEAEKLGFKKIYISKYNVKGLIFKNYNIQIIPVAKLDEVFGEVLR

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=302919 DTQ70_RS04575 WP_028522199.1 1087939..1089306(-) (radA) [Runella sp. SP2]
ATGGCAAAAGTAAAAACAGCCTATTTCTGTCAAAACTGTGGCCACCAAGCTACAAAATGGATGGGGCGTTGCCCATCTTG
TGGTGAGTGGAATACTTTGGTAGAAGAAGTCATTGAGAAAGAAGACAAAAAAGGGCCATTGGCTCAGTGGAAATCGGTGA
GCTTAGCCCCCAAACCGAAAGCCATCAACGAAATAAAATACGAAGAAGAGCCTCGCATCGTCACTTCCGATGCCGAGCTT
AATCGCGTTTTGGGAGGTGGAATTGTGTTAGGTTCATTGGTATTGATTGGAGGTGAACCTGGTATTGGGAAATCAACGTT
GATGCTCCAAATTGCCCTTACACTTACCCAAAAAGTGCTGTACGTTTCGGGAGAAGAAAGCGAATCGCAAATTAAAATGC
GGGCGGAGCGTTTGAGTAGTAAAAACAACAATTGCTTTATCCTTACCGAAACCTCCACCGACAATATTTTCCGCCAAATC
GAAGAATTTGACCCCGATGTACTCATCATTGACTCCATCCAAACCATGCAATCGTCGCTGATTGAGTCAGGCGCGGGTAG
TGTGTCGCAGGTGCGTCAATGCGCGGCCGAATTAATGAAATATGCCAAAGAAAGCGGCGTTCCCGTGTTTATGATTGGGC
ATATTACCAAAGATGGAAATTTGGCAGGGCCCAAAACCCTCGAACACATGGTGGACACCGTGCTGCAATTTGAGGGCGAC
CGCCATACCACTTACCGCATTTTGCGCACGACCAAAAACCGTTTTGGTAGCACCTCCGAACTGGGAATCTACGAAATGCT
GGGGTCGGGACTTCGTCAAGTAACCAATCCTTCCGAAATTTTAATCTCCCAACGAGAAGAGCACCTCAGCGGCATTACGA
TTGGGTCAATGCTAGAAGGAAATAGACCCTTAAAGATTGAAATTCAGTCGCTTGTGAGTGTCGCCAACTACGGAACACCT
CAACGAAGCAGTACAGGTTTTGATAACAAACGCCTACAAATGTTGTTGGCGGTACTCGAAAAACGAGGCGGTTTTCGGTT
AGGAACGCAAGATGTTTTCCTTAATGTAGCAGGCGGCCTTCGCGTCGAAGACCCCGCCATCGACTTGGCAGTCGTTACGT
CTCTTGCTTCTTCCTACGAAGATTCTTATGTCCCCCCTTCCATCTGTTTTGCGGGGGAAGTCGGGCTGGGTGGCGAAGTA
CGGGCCGTGAATCGAATCGAAGGGCGAATTGCGGAAGCTGAAAAGCTCGGTTTTAAGAAAATTTACATATCCAAATACAA
TGTTAAAGGGTTGATTTTCAAAAACTACAACATCCAAATTATCCCCGTTGCAAAACTTGATGAGGTTTTTGGGGAAGTTT
TACGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

AAA domain (AAA_25)

(73-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.759

99.56

0.525
  radA Streptococcus mitis NCTC 12261

50.219

100

0.503
  radA Streptococcus mitis SK321

50.219

100

0.503
  radA Streptococcus pneumoniae TIGR4

50

100

0.501
  radA Streptococcus pneumoniae R6

50

100

0.501
  radA Streptococcus pneumoniae Rx1

50

100

0.501
  radA Streptococcus pneumoniae D39

50

100

0.501

Multiple sequence alignment