Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   DT536_RS03455 Genome accession   NZ_CP031011
Coordinates   718882..719205 (-) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 713882..724205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS03435 (DT536_03435) - 713923..714666 (-) 744 WP_114392530.1 FHA domain-containing protein -
  DT536_RS03440 (DT536_03440) gspD 714753..717110 (-) 2358 WP_114392533.1 type II secretion system secretin GspD -
  DT536_RS03445 (DT536_03445) - 717150..717974 (-) 825 WP_039890327.1 type II secretion system protein N -
  DT536_RS03450 (DT536_03450) gspN 717974..718684 (-) 711 WP_058868751.1 type II secretion system protein N -
  DT536_RS03455 (DT536_03455) hns 718882..719205 (-) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  DT536_RS03460 (DT536_03460) - 719357..719785 (-) 429 WP_058868750.1 acyl-CoA thioesterase -
  DT536_RS03465 (DT536_03465) - 719793..720986 (-) 1194 WP_058868749.1 hypothetical protein -
  DT536_RS03470 (DT536_03470) - 720991..721833 (-) 843 WP_058868748.1 hypothetical protein -
  DT536_RS03475 (DT536_03475) - 721830..722609 (-) 780 WP_058868747.1 uroporphyrinogen-III synthase -
  DT536_RS03480 (DT536_03480) hemC 722622..723542 (-) 921 WP_058868746.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=302824 DT536_RS03455 WP_004692786.1 718882..719205(-) (hns) [Acinetobacter johnsonii strain LXL_C1]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=302824 DT536_RS03455 WP_004692786.1 718882..719205(-) (hns) [Acinetobacter johnsonii strain LXL_C1]
ATGCCAGATATTAGTAATTTGTCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAACAAATTTTAG
AGTTTGGCGCGACTAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTAGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTCTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86

Multiple sequence alignment