Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECSMS35_RS10950 Genome accession   NC_010498
Coordinates   2165816..2166445 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli SMS-3-5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2160816..2171445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSMS35_RS10935 (EcSMS35_2157) helD 2161058..2163112 (-) 2055 WP_012311774.1 DNA helicase IV -
  ECSMS35_RS10940 (EcSMS35_2158) yccF 2163235..2163681 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ECSMS35_RS10945 (EcSMS35_2160) yccS 2163691..2165853 (+) 2163 WP_000875033.1 YccS family putative transporter -
  ECSMS35_RS10950 (EcSMS35_2159) sxy/tfoX 2165816..2166445 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECSMS35_RS10955 (EcSMS35_2162) sulA 2166664..2167173 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECSMS35_RS10965 (EcSMS35_2163) ompA 2167529..2168581 (+) 1053 WP_024175778.1 porin OmpA -
  ECSMS35_RS10970 (EcSMS35_2164) matP 2168657..2169109 (-) 453 WP_000877166.1 macrodomain Ter protein MatP -
  ECSMS35_RS10975 (EcSMS35_2165) ycbZ 2169295..2171055 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=30280 ECSMS35_RS10950 WP_000839153.1 2165816..2166445(-) (sxy/tfoX) [Escherichia coli SMS-3-5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=30280 ECSMS35_RS10950 WP_000839153.1 2165816..2166445(-) (sxy/tfoX) [Escherichia coli SMS-3-5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment