Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ETT52_RS05785 Genome accession   NZ_CP035447
Coordinates   1141449..1143110 (-) Length   553 a.a.
NCBI ID   WP_109991714.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm97.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1136449..1148110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT52_RS05760 (ETT52_05750) - 1137495..1137770 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  ETT52_RS05765 (ETT52_05755) - 1137869..1138456 (-) 588 WP_002989129.1 YpmS family protein -
  ETT52_RS05770 (ETT52_05760) - 1138434..1139276 (-) 843 WP_032460551.1 SGNH/GDSL hydrolase family protein -
  ETT52_RS05775 (ETT52_05765) - 1139269..1140108 (-) 840 WP_002989125.1 DegV family protein -
  ETT52_RS05780 (ETT52_05770) - 1140336..1141277 (-) 942 WP_011285633.1 LPXTG cell wall anchor domain-containing protein -
  ETT52_RS05785 (ETT52_05775) recN 1141449..1143110 (-) 1662 WP_109991714.1 DNA repair protein RecN Machinery gene
  ETT52_RS05790 (ETT52_05780) - 1143132..1143602 (-) 471 WP_002983907.1 arginine repressor -
  ETT52_RS05795 (ETT52_05785) - 1143589..1144416 (-) 828 WP_003056952.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  ETT52_RS05800 (ETT52_05790) - 1144409..1145281 (-) 873 WP_011284950.1 polyprenyl synthetase family protein -
  ETT52_RS05805 (ETT52_05795) - 1145281..1145496 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  ETT52_RS05810 (ETT52_05800) xseA 1145474..1146814 (-) 1341 WP_076639309.1 exodeoxyribonuclease VII large subunit -
  ETT52_RS05815 (ETT52_05805) - 1146967..1147821 (-) 855 WP_010922486.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62187.34 Da        Isoelectric Point: 4.5840

>NTDB_id=302798 ETT52_RS05785 WP_109991714.1 1141449..1143110(-) (recN) [Streptococcus pyogenes strain emm97.1]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIIKEYQLLTGDDLSSGDLESELKALEKQLVAAASELSVSRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=302798 ETT52_RS05785 WP_109991714.1 1141449..1143110(-) (recN) [Streptococcus pyogenes strain emm97.1]
ATGTTATTAGAAATTTCTATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGAGATATCTTTGCTAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGATGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATTATCAAAGAATACCAGCTATTAACAGGAGACGATTTGTCTTCAGGGGACCT
AGAATCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCTGCTTCGGAGTTAAGTGTCTCTCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTTAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTTAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGCTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.838

100

0.45