Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DT351_RS09315 Genome accession   NZ_CP031003
Coordinates   1780062..1781870 (+) Length   602 a.a.
NCBI ID   WP_076787487.1    Uniprot ID   A0A385AFP9
Organism   Latilactobacillus curvatus strain TMW 1.1928     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775062..1786870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT351_RS09305 (DT351_09305) - 1777240..1778478 (-) 1239 WP_080752751.1 nucleoside transporter C-terminal domain-containing protein -
  DT351_RS09310 (DT351_09310) - 1778657..1779799 (-) 1143 WP_240327176.1 LCP family protein -
  DT351_RS09315 (DT351_09315) pepF 1780062..1781870 (+) 1809 WP_076787487.1 oligoendopeptidase F Regulator
  DT351_RS09320 (DT351_09320) - 1781911..1782687 (-) 777 WP_054644252.1 metal ABC transporter permease -
  DT351_RS09325 (DT351_09325) - 1782722..1783402 (-) 681 WP_004265149.1 ATP-binding cassette domain-containing protein -
  DT351_RS09330 (DT351_09330) - 1783399..1784286 (-) 888 WP_004265075.1 zinc ABC transporter substrate-binding protein -
  DT351_RS09335 (DT351_09335) - 1784560..1785114 (-) 555 WP_076787481.1 hypothetical protein -
  DT351_RS09340 (DT351_09340) - 1785220..1786761 (-) 1542 WP_004265146.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67267.23 Da        Isoelectric Point: 4.5897

>NTDB_id=302791 DT351_RS09315 WP_076787487.1 1780062..1781870(+) (pepF) [Latilactobacillus curvatus strain TMW 1.1928]
MSTQQLPTRDAVPEKLTWDLTTIFKNDAAFEVAFKKVKTQLPTLKTLDRPFESADQLVATIEQILATFRQLETIYVYASM
KNDQDTANATYQGYQAQVDSLAAEVSAAAAFLEPAILAIPAGQLADWLTKTPNLAVYSHFIQTITDSRDHVLSGQEEALL
AAAGDIFSAASQTFSVLDNSDLQFPEVTDENGQTLQLSDGVYSQLLQSTNRSVRQAAFEALYKTYGQFKNTFATTLATEI
KGHNYLAQVHHYDSARQAALAPKAIPEAVYTTLVDQVNQHLPLLHRYTELRKKQLNLSELHMFDLYTPLLGKPALTYTYE
QAQATAKEALSILGPDYAKQVTHIVDDRLIDVCENQGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSAF
TRQTQDYVYGDYPIFVAEIASTTNENLLTEYLLQTQSDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHAMHAAAANGQPL
TAEFMSQQYADINSRYYGPAVVNDPQIALEWTRIPHFYMNYYVYQYATGFAAATTLANGISTKQPGALDHYLDYLKAGSS
AYPIEIMQQAGVDMTSADYLERAFAVFEERLDQLEALLANLN

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=302791 DT351_RS09315 WP_076787487.1 1780062..1781870(+) (pepF) [Latilactobacillus curvatus strain TMW 1.1928]
ATGTCAACTCAACAACTCCCCACCCGCGATGCTGTTCCAGAAAAGCTCACATGGGACTTAACCACGATTTTCAAAAATGA
TGCAGCTTTTGAAGTAGCCTTTAAGAAAGTTAAAACGCAATTACCCACACTCAAAACACTTGATCGTCCGTTTGAATCGG
CTGATCAATTAGTCGCTACAATCGAACAAATCTTAGCCACTTTCCGCCAACTCGAAACAATTTATGTTTATGCTAGCATG
AAAAATGATCAAGATACTGCTAACGCAACTTATCAAGGCTATCAAGCCCAAGTGGACAGCTTAGCGGCCGAAGTTTCAGC
AGCAGCGGCCTTTTTAGAGCCTGCGATTCTTGCTATTCCAGCTGGGCAATTAGCAGATTGGCTTACCAAGACGCCTAATT
TAGCAGTTTACAGCCACTTCATTCAAACCATTACCGATAGTCGAGACCATGTCTTATCTGGGCAAGAAGAAGCCTTGTTA
GCTGCTGCCGGAGATATCTTCAGTGCTGCTAGTCAAACCTTCAGCGTCTTAGACAACTCGGATTTACAATTCCCAGAAGT
GACTGACGAAAACGGACAAACGTTGCAGCTTTCAGATGGGGTCTACAGCCAACTTTTACAATCAACCAACCGATCAGTCC
GCCAAGCAGCCTTCGAAGCACTTTACAAAACTTATGGTCAATTCAAAAATACATTTGCGACGACGCTTGCCACTGAAATC
AAAGGTCACAATTACTTAGCTCAAGTCCATCACTACGATAGTGCACGCCAAGCAGCGCTAGCACCAAAAGCAATTCCAGA
AGCCGTCTATACAACCTTGGTTGATCAAGTGAACCAACACTTACCACTTTTACATCGCTATACTGAATTACGCAAAAAGC
AACTGAATTTATCTGAATTACACATGTTTGATCTCTACACACCACTTCTAGGAAAACCCGCATTAACCTACACTTATGAG
CAGGCGCAAGCAACTGCCAAAGAGGCGTTGTCGATCCTAGGACCCGATTACGCCAAACAAGTTACCCATATTGTTGATGA
CCGCTTAATCGATGTTTGTGAAAATCAAGGGAAACGGAGTGGCGCCTATTCTGGCGGCGCTTATGACACCAATCCCTTCA
TTTTATTAAACTGGCAAGATGATTTAAACAACTTATACACATTGGTCCATGAAACGGGGCATAGTGTCCACAGCGCCTTC
ACCCGTCAGACCCAAGATTATGTTTATGGCGACTATCCAATTTTCGTGGCCGAAATTGCGTCAACAACCAATGAAAATCT
CTTAACGGAATATTTATTGCAAACACAATCTGATCCTAAGGTCCAGGCCTATCTATTGAACTACTATTTGGATGGTTTTA
AAGGCACTGTTTTCCGTCAAACGCAATTCGCTGAGTTCGAACATGCGATGCATGCTGCCGCTGCCAATGGTCAGCCACTA
ACTGCCGAGTTCATGTCACAACAATATGCGGACATTAATAGCCGCTACTACGGACCTGCCGTCGTTAACGATCCACAGAT
TGCCCTTGAATGGACTCGGATTCCACATTTCTACATGAACTATTATGTTTACCAATACGCAACCGGCTTTGCTGCTGCAA
CGACTCTCGCTAACGGTATTAGCACCAAACAGCCCGGTGCTCTCGATCACTATTTAGACTACCTAAAAGCTGGGAGCTCC
GCCTACCCAATTGAAATTATGCAACAAGCCGGCGTCGATATGACGAGTGCCGACTATCTCGAACGCGCTTTTGCAGTTTT
CGAAGAACGTCTGGATCAACTCGAAGCCCTACTTGCTAACCTAAATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-585)

Oligopeptidase F (Peptidase_M3_N)

(116-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385AFP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.992

98.173

0.54

Multiple sequence alignment