Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DT351_RS09145 Genome accession   NZ_CP031003
Coordinates   1737065..1738429 (-) Length   454 a.a.
NCBI ID   WP_004264990.1    Uniprot ID   A0A385AFP3
Organism   Latilactobacillus curvatus strain TMW 1.1928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1732065..1743429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT351_RS09120 (DT351_09120) - 1732155..1732688 (-) 534 WP_004265051.1 NYN domain-containing protein -
  DT351_RS09125 (DT351_09125) rlmB 1732692..1733579 (-) 888 WP_081395372.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DT351_RS09130 (DT351_09130) - 1733566..1733973 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  DT351_RS09135 (DT351_09135) cysS 1733970..1735376 (-) 1407 WP_076786780.1 cysteine--tRNA ligase -
  DT351_RS09140 (DT351_09140) - 1735922..1737034 (-) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -
  DT351_RS09145 (DT351_09145) radA 1737065..1738429 (-) 1365 WP_004264990.1 DNA repair protein RadA Machinery gene
  DT351_RS09150 (DT351_09150) - 1738508..1739047 (-) 540 WP_004265089.1 dUTP diphosphatase -
  DT351_RS09155 (DT351_09155) rpiA 1739228..1739911 (+) 684 WP_039098344.1 ribose-5-phosphate isomerase RpiA -
  DT351_RS09160 (DT351_09160) - 1740235..1741520 (+) 1286 Protein_1753 C1 family peptidase -
  DT351_RS09165 (DT351_09165) - 1741828..1743174 (+) 1347 WP_056967168.1 C1 family peptidase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49734.24 Da        Isoelectric Point: 7.3493

>NTDB_id=302790 DT351_RS09145 WP_004264990.1 1737065..1738429(-) (radA) [Latilactobacillus curvatus strain TMW 1.1928]
MAKIKTQFVCQNCGYSSPRFLGRCPNCGAWNQMVEEREQPAASAKSSFTISGRATEPEQISTVNIQKEPRIKTELNELNR
VLGGGVVPGSLILIGGDPGIGKSTLLLQVSGQLEKVGKILYVSGEESVSQIKMRANRLDVNGDQLYLYPETDMGKIRHQI
ETMKPDFVVIDSIQTMSEPEVISAVGSVSQVRQVTAELMRIAKTNQITIFVVGHVTKEGAIAGPKILEHMVDTVLYFEGD
THHTYRILRSVKNRFGSTNEIGIFEMREAGLKEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVELQTLITPTLFGNA
KRTSSGLDHNRVSLIMAVLEKRASLMLSNQDAYLKATGGVKLDEPAIDLAMAVSIASSYRDKEIPPTDCFVGEIGLTGEI
RRVNRIEQRVSEAAKLGFKRIYVPKNNLQGWDAPTDIQVIGVTTIAETLKKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=302790 DT351_RS09145 WP_004264990.1 1737065..1738429(-) (radA) [Latilactobacillus curvatus strain TMW 1.1928]
GTGGCTAAAATTAAGACTCAGTTTGTTTGCCAAAATTGTGGCTATAGTTCCCCGAGATTCTTAGGTCGGTGCCCGAATTG
TGGCGCTTGGAACCAAATGGTCGAAGAACGTGAACAACCTGCAGCTAGCGCGAAATCAAGTTTTACGATTTCAGGGCGGG
CAACTGAACCAGAACAAATCAGCACCGTTAATATTCAAAAGGAACCGCGTATTAAAACTGAATTAAACGAACTCAACCGC
GTGCTTGGCGGTGGAGTGGTACCGGGCTCATTGATTCTAATTGGTGGGGATCCTGGGATTGGGAAATCAACGTTACTCCT
ACAAGTTTCCGGACAACTTGAAAAGGTTGGTAAGATTCTTTATGTTTCTGGTGAAGAAAGTGTATCCCAGATTAAGATGC
GGGCTAACCGGCTTGATGTGAATGGCGATCAACTTTACTTATATCCTGAAACGGATATGGGCAAGATTCGGCATCAGATT
GAAACAATGAAACCCGACTTTGTGGTGATTGATTCAATTCAAACGATGAGCGAACCAGAAGTGATTTCCGCAGTCGGTAG
TGTTTCACAAGTGCGTCAAGTCACCGCTGAATTGATGCGCATTGCGAAGACGAACCAGATTACGATTTTTGTGGTTGGGC
ATGTCACTAAAGAAGGCGCTATTGCCGGTCCTAAGATTTTGGAGCACATGGTAGATACTGTATTGTACTTTGAAGGGGAT
ACGCATCATACTTACCGCATTCTTCGCTCGGTTAAGAACCGGTTTGGTTCAACCAATGAGATTGGGATTTTCGAAATGCG
TGAAGCCGGCTTAAAAGAGGTCGCGAACCCATCCGAGATTTTCCTAGAAGAACGTTTGGCAGGGGCGACAGGTTCAGCCG
TGGTTGTTTCGATGGAAGGCACGCGGCCGATTTTGGTCGAGTTACAGACCCTAATTACCCCAACACTATTCGGGAATGCA
AAGCGCACGTCTTCAGGGTTAGATCATAATCGGGTCTCCTTGATTATGGCGGTGCTCGAAAAGCGTGCTAGTCTCATGCT
ATCGAACCAAGATGCGTATTTAAAAGCAACTGGCGGTGTTAAATTAGATGAACCTGCGATTGATTTGGCGATGGCTGTTT
CGATTGCATCAAGCTATCGGGATAAAGAAATCCCACCAACTGATTGTTTCGTTGGTGAAATCGGCCTGACTGGTGAAATT
CGCCGGGTCAACCGGATTGAACAACGCGTCAGTGAAGCTGCTAAATTAGGCTTTAAACGTATTTATGTACCAAAGAATAA
CTTACAAGGGTGGGACGCACCGACGGATATCCAAGTGATTGGTGTGACCACGATTGCAGAAACTTTAAAGAAAGTATTCA
ACTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385AFP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

69.095

99.78

0.689
  radA Streptococcus pneumoniae Rx1

69.095

99.78

0.689
  radA Streptococcus pneumoniae D39

69.095

99.78

0.689
  radA Streptococcus pneumoniae R6

69.095

99.78

0.689
  radA Streptococcus pneumoniae TIGR4

69.095

99.78

0.689
  radA Streptococcus mitis NCTC 12261

69.095

99.78

0.689
  radA Bacillus subtilis subsp. subtilis str. 168

65.342

99.78

0.652

Multiple sequence alignment