Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DT426_RS06230 Genome accession   NZ_CP030982
Coordinates   1207459..1207782 (-) Length   107 a.a.
NCBI ID   WP_000578875.1    Uniprot ID   -
Organism   Bacillus cereus strain ZB201708     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1202459..1212782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT426_RS06205 (DT426_06215) - 1202711..1203997 (+) 1287 WP_000247023.1 D-alanyl-D-alanine carboxypeptidase family protein -
  DT426_RS06210 (DT426_06220) - 1204192..1204761 (+) 570 WP_086398452.1 signal peptidase I -
  DT426_RS06215 (DT426_06225) - 1204822..1205409 (+) 588 WP_000172852.1 CalY family protein -
  DT426_RS06220 (DT426_06230) - 1205544..1206404 (+) 861 WP_000919975.1 DUF4047 domain-containing protein -
  DT426_RS06225 (DT426_06235) calY 1206793..1207386 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  DT426_RS06230 (DT426_06240) sinR 1207459..1207782 (-) 324 WP_000578875.1 helix-turn-helix domain-containing protein Regulator
  DT426_RS06235 (DT426_06245) - 1207862..1207996 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  DT426_RS06240 (DT426_06250) inhA1 1208339..1210726 (+) 2388 WP_001035950.1 M6 family metalloprotease immune inhibitor InhA1 -
  DT426_RS06245 (DT426_06255) - 1210898..1212265 (+) 1368 WP_000028385.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12291.16 Da        Isoelectric Point: 9.9745

>NTDB_id=302724 DT426_RS06230 WP_000578875.1 1207459..1207782(-) (sinR) [Bacillus cereus strain ZB201708]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKATNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=302724 DT426_RS06230 WP_000578875.1 1207459..1207782(-) (sinR) [Bacillus cereus strain ZB201708]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGCAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment