Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAQM_RS04550 Genome accession   NZ_CP030944
Coordinates   912155..913504 (-) Length   449 a.a.
NCBI ID   WP_129095574.1    Uniprot ID   A0AAE7B1G2
Organism   Arcobacter aquimarinus strain W63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 907155..918504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAQM_RS04520 (AAQM_0905) - 907264..908835 (-) 1572 WP_129095579.1 endonuclease/exonuclease/phosphatase family protein -
  AAQM_RS04525 (AAQM_0906) - 908924..909583 (-) 660 WP_129095578.1 ferritin family protein -
  AAQM_RS04530 (AAQM_0907) - 909845..910249 (+) 405 WP_128987546.1 Fur family transcriptional regulator -
  AAQM_RS04535 (AAQM_0908) - 910257..911180 (-) 924 WP_129095577.1 calcium/sodium antiporter -
  AAQM_RS04540 (AAQM_0909) ybeY 911182..911601 (-) 420 WP_129095576.1 rRNA maturation RNase YbeY -
  AAQM_RS04545 (AAQM_0910) - 911692..912096 (+) 405 WP_129095575.1 thioesterase -
  AAQM_RS04550 (AAQM_0911) radA 912155..913504 (-) 1350 WP_129095574.1 DNA repair protein RadA Machinery gene
  AAQM_RS04555 (AAQM_0912) - 913603..914091 (+) 489 WP_129095573.1 RNase H family protein -
  AAQM_RS04560 (AAQM_0913) - 914083..915066 (-) 984 WP_129095572.1 lipid A deacylase LpxR family protein -
  AAQM_RS04565 (AAQM_0914) - 915124..915687 (+) 564 WP_129095571.1 YqiA/YcfP family alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49305.78 Da        Isoelectric Point: 6.6577

>NTDB_id=302678 AAQM_RS04550 WP_129095574.1 912155..913504(-) (radA) [Arcobacter aquimarinus strain W63]
MAKKKISLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQEQQEVLKHSSKIINTSSKAKPITQIVQDDVTRFSSFNDEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSISKSGKKVLYVSGEESAGQIKLRANRLEANHDELFLLSEIKLEEIQD
ELLRQNYEVVIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTAEGLISAKDIASKFFDKSKAQSGSALTVVMEGSRAIILEVQALVTESTYPN
PKRSATGFDANRLTMLLALLEKKIDLPLNNYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESAFIGEVSLTGE
IKDVYSIDLRLKEAQAQGMKKAVIAQKTNLKLDIKTFAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=302678 AAQM_RS04550 WP_129095574.1 912155..913504(-) (radA) [Arcobacter aquimarinus strain W63]
ATGGCAAAAAAGAAAATATCACTTTTTGAGTGTCAACATTGTGGAGAACAATCTACAAAGTGGCTTGGAAAATGTCCAAA
CTGCGGTTCATGGGATTCATTCATAGAATTGAATCAAGAACAACAAGAAGTTTTAAAACACTCATCAAAAATCATAAATA
CAAGTTCAAAAGCAAAACCCATAACACAAATAGTTCAAGATGATGTTACAAGATTTTCTTCATTTAATGATGAATTTGAT
TTAGTTTTAGGAGGAGGAATTGTTCCTGGAAGTTTAACTTTAATAGGAGGAAGTCCAGGAGTTGGAAAATCAACTCTTTT
ACTGAAAGTTGCTGGAAGTATCTCAAAATCAGGTAAAAAAGTACTTTATGTTTCAGGTGAAGAGAGTGCTGGACAAATAA
AACTAAGGGCGAATAGACTTGAAGCAAATCATGATGAACTTTTTTTATTAAGTGAAATAAAACTTGAAGAGATTCAAGAT
GAACTTTTGAGACAAAATTATGAAGTAGTAATTATCGACTCTATTCAAACTATTTATTCATCAAATCTAACATCAGCACC
AGGAAGTGTTTCTCAGGTACGTGAAATTACTTTTGAGTTAATGAGAAAAGCAAAAGAGTCAAATATTGCTATGTTTATAA
TTGGACATATCACAAAAGATGGAAGTATTGCAGGTCCAAGAGTTTTAGAACACATGGTTGATACTGTTTTGTATTTTGAA
GGAGAAGCAAGTAGAGAACTTAGGATGCTTCGAGGTTTTAAAAACCGTTTTGGTTCAACTAGTGAAATTGGTATTTTTGA
GATGACAGCAGAAGGACTTATAAGTGCAAAAGATATAGCTTCAAAATTTTTTGATAAAAGTAAAGCCCAAAGTGGTTCTG
CTCTTACAGTTGTTATGGAGGGAAGTCGTGCTATAATTTTGGAAGTTCAAGCACTTGTAACTGAAAGCACTTATCCAAAT
CCAAAAAGAAGTGCCACTGGATTTGACGCAAATAGACTTACCATGCTTTTAGCTTTACTTGAAAAAAAGATAGATTTACC
ACTAAATAATTATGATGTTTTTATAAACATAAGTGGCGGAATAAAAATTAAAGAAAGTAGTGCTGATTTAGCTGTAATTG
CTGCAATTATTTCCTCTTTTAGAGATAGACCTATTTCGAAAGAGTCAGCATTTATAGGTGAAGTTTCCCTAACTGGTGAA
ATAAAAGATGTTTATTCTATTGATTTAAGATTAAAAGAGGCACAAGCTCAAGGCATGAAAAAAGCTGTAATTGCCCAAAA
AACAAATCTGAAACTTGATATTAAGACTTTTGCAGTTGATGAAGTTTCTAAAATGATTGAATTATTTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-427)

AAA domain (AAA_25)

(76-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.465

95.768

0.483
  radA Streptococcus pneumoniae Rx1

47.357

100

0.479
  radA Streptococcus pneumoniae D39

47.357

100

0.479
  radA Streptococcus pneumoniae R6

47.357

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.357

100

0.479
  radA Streptococcus mitis NCTC 12261

49.188

95.991

0.472
  radA Streptococcus mitis SK321

49.188

95.991

0.472

Multiple sequence alignment