Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AAQM_RS04150 Genome accession   NZ_CP030944
Coordinates   836929..838779 (-) Length   616 a.a.
NCBI ID   WP_129096207.1    Uniprot ID   A0AAE7B1B5
Organism   Arcobacter aquimarinus strain W63     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 831929..843779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAQM_RS04130 (AAQM_0826) - 832486..833244 (+) 759 WP_129096211.1 molybdopterin-binding protein -
  AAQM_RS04135 (AAQM_0827) - 833241..835196 (-) 1956 WP_129096210.1 EAL domain-containing protein -
  AAQM_RS04140 (AAQM_0828) - 835239..835907 (-) 669 WP_129096209.1 tetratricopeptide repeat protein -
  AAQM_RS04145 (AAQM_0829) - 835904..836926 (-) 1023 WP_129096208.1 alanine racemase -
  AAQM_RS04150 (AAQM_0830) uvrC 836929..838779 (-) 1851 WP_129096207.1 excinuclease ABC subunit UvrC Machinery gene
  AAQM_RS04155 (AAQM_0831) - 838810..840105 (-) 1296 WP_129096206.1 diguanylate cyclase -
  AAQM_RS04160 (AAQM_0832) - 840189..840944 (-) 756 WP_171920654.1 choline/ethanolamine kinase family protein -
  AAQM_RS04165 (AAQM_0833) pnuC 840934..841506 (-) 573 WP_129096171.1 nicotinamide riboside transporter PnuC -
  AAQM_RS04170 (AAQM_0834) - 841558..842034 (-) 477 WP_129096172.1 glutathione peroxidase -
  AAQM_RS04175 (AAQM_0835) - 842256..843704 (+) 1449 Protein_819 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72028.21 Da        Isoelectric Point: 8.9101

>NTDB_id=302677 AAQM_RS04150 WP_129096207.1 836929..838779(-) (uvrC) [Arcobacter aquimarinus strain W63]
MNLLEKLKQLPQDAGVYQYFDKNGHLLYIGKAKVLKNRVKSYFKFTPKLLPSDKLGPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFIDYNEDFPRLEITRKVYKEKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
VKSKTACLFHQIQKCFAPCENKISKEEYAKIVENALEFIYNKTKLISKLNEKMLQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAITTTNKKAVVVRMFLRDGKLTSSNHDFLKIDNYEEEFEFDYEEAYKRAIINYYDNEIPLLPKEI
LVGIELDDTTELEEFLQIRFNKKIKILNPKKDKKKDIVQIALSNCDELLRIDSSKNETNIYEDLKELFNLQTLPYIIESF
DNSHMMGQATVGAMIVWNETLNSFDKKAFRHYNLESKDEYSQMREMLIRRVESFPKNPAPDLWIIDGGETLLKLAYDIVQ
SVGVNLDIIAIAKEKLDAKAHRAKGAAKDIIHYKNKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIKNASLEELKNVLNEKDANTILNYFTASKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=302677 AAQM_RS04150 WP_129096207.1 836929..838779(-) (uvrC) [Arcobacter aquimarinus strain W63]
ATGAATCTACTTGAAAAACTAAAACAACTCCCACAAGATGCAGGGGTTTATCAATACTTTGACAAAAATGGACATCTTCT
TTATATTGGAAAAGCAAAAGTTCTAAAAAACAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTTCTTCCTTCTGATA
AGTTAGGTCCACGAATTTATAAAATGATTAGTGAAGTTGAGAGTTGTGAATGGATTGTTGTTCCAAATGAACATGATGCA
CTTATTTTAGAAAATTCATTAATAAAACAGCTAAAACCAAAATACAATATTTTACTTCGCGATGATAAAACATATCCTTA
TATTTTTATAGATTATAATGAAGATTTTCCAAGACTTGAAATCACAAGAAAAGTATATAAAGAAAAAAATATAAAATATT
TTGGACCTTATTCAAGTGGTGCAAAAGATATGCTTGATTCTATTTATGAAATTGTTCCATTAGTTCAAAAGAAATCTTGT
GTTAAAAGTAAAACAGCTTGTTTATTTCATCAAATTCAAAAATGTTTTGCTCCTTGTGAAAATAAAATTTCAAAAGAAGA
ATATGCCAAAATAGTAGAAAATGCTTTAGAATTTATCTATAATAAAACAAAACTTATTTCTAAACTGAATGAAAAAATGC
TTCAATATTCAAATGATTTTAGATTTGAAGAAGCTATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCACAAATA
AAATCAGGAATAGATTTAGCAACAAATGAAGATATAGATATCTTTGCAATTACTACAACAAATAAAAAAGCAGTTGTAGT
ACGTATGTTTTTAAGAGATGGAAAATTAACCTCATCAAATCACGATTTTTTAAAGATTGATAATTACGAAGAAGAGTTTG
AGTTTGATTATGAAGAAGCTTATAAAAGAGCAATTATAAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAAATT
TTAGTAGGAATCGAACTAGATGATACAACTGAACTTGAAGAATTTTTACAAATAAGATTTAATAAAAAAATCAAGATTCT
AAATCCTAAAAAAGATAAGAAAAAAGATATTGTTCAAATTGCCCTTAGTAACTGCGATGAACTTTTACGAATTGATTCAA
GTAAAAATGAAACAAATATTTATGAAGATTTAAAAGAATTATTCAACTTACAAACTCTTCCATATATAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACTGTTGGAGCTATGATAGTTTGGAATGAAACTTTAAACTCTTTTGATAAAAA
AGCTTTTAGACACTATAACCTTGAATCAAAAGATGAATACTCACAAATGAGAGAAATGTTAATAAGAAGAGTTGAAAGTT
TTCCTAAAAATCCAGCTCCTGATTTATGGATTATTGATGGTGGAGAAACGCTTTTAAAACTAGCATATGACATAGTGCAA
TCTGTTGGAGTAAATCTTGATATTATTGCAATTGCAAAAGAAAAACTAGATGCAAAGGCTCATAGAGCAAAGGGTGCAGC
AAAAGATATAATTCATTATAAAAATAAAAATGGCGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGATTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCATAGATTTGCTATAACATTCCACAAAAAACAAAAAAGAGCTCAAGATAAACAG
ATTTCTTTATTACAAATCAAAGGAATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGTGAATTTGAAAAAAT
CAAAAATGCATCTTTAGAAGAATTAAAAAATGTATTAAATGAAAAAGATGCAAATACAATTTTAAACTATTTTACAGCCT
CAAAGGATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.41

97.89

0.503

Multiple sequence alignment