Detailed information NTG0030265

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AVIN_RS17620
• Genome accession: NC_012560
• Coordinates: 3912683..3913687 (-)
• Length: 334 a.a.
• NCBI ID: WP_012702383.1
• Uniprot ID: C1DSR5
• Organism: Azotobacter vinelandii DJ
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3907683..3918687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVIN_RS17605 (Avin_38650)	fdxA	3909868..3910191 (+)	324	WP_012702380.1	ferredoxin FdxA	-
AVIN_RS17610 (Avin_38660)	-	3910483..3911038 (-)	556	Protein_3554	methyl-accepting chemotaxis protein	-
AVIN_RS17615 (Avin_38670)	-	3911117..3912058 (-)	942	WP_012702382.1	PAS domain-containing protein	-
AVIN_RS17620 (Avin_38680)	rpoS	3912683..3913687 (-)	1005	WP_012702383.1	RNA polymerase sigma factor RpoS	Regulator
AVIN_RS25460 (Avin_38690)	-	3913787..3914641 (-)	855	WP_012702384.1	peptidoglycan DD-metalloendopeptidase family protein	-
AVIN_RS27380	-	3914687..3914872 (-)	186	WP_367888945.1	undecaprenyl phosphate translocase family protein	-
AVIN_RS17630 (Avin_38700)	-	3915077..3915757 (-)	681	WP_012702385.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AVIN_RS17635 (Avin_38710)	surE	3915757..3916506 (-)	750	WP_012702386.1	5'/3'-nucleotidase SurE	-
AVIN_RS17640 (Avin_38720)	truD	3916494..3917552 (-)	1059	WP_012702387.1	tRNA pseudouridine(13) synthase TruD	-
AVIN_RS17645 (Avin_38730)	ispF	3917549..3918022 (-)	474	WP_012702388.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38305.67 Da
• Isoelectric Point: 4.7697

>NTDB_id=30265 AVIN_RS17620 WP_012702383.1 3912683..3913687(-) (rpoS) [Azotobacter vinelandii DJ]
MALNIKAKEAPEFDVDDDVLLMDADIVLEDVLDDEPDLPVAKSRQANLKQHKYIDYTRALDATQLYLNEIGFSPLLTPAE
EVHFARLAQRGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSAEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DVLTDDRPSDPCDLLQDDDLSQSIDQWLFDLTEKQREVVVRRFGLRGHESCTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=30265 AVIN_RS17620 WP_012702383.1 3912683..3913687(-) (rpoS) [Azotobacter vinelandii DJ]
ATGGCTCTCAATATAAAAGCAAAAGAAGCGCCGGAGTTTGATGTAGACGATGATGTGCTCCTGATGGACGCCGACATCGT
GCTGGAGGATGTCCTGGACGATGAGCCGGACCTCCCCGTCGCGAAGTCCAGGCAGGCGAACCTGAAGCAGCACAAGTACA
TCGACTACACTAGGGCGCTGGATGCGACCCAGCTCTACCTCAACGAAATCGGCTTCTCGCCGCTGCTGACACCAGCGGAG
GAAGTGCATTTCGCGCGGCTGGCGCAGCGGGGAGACCCGGCTGGCCGCAAGCGGATGATCGAAAGCAACCTGCGACTGGT
GGTCAAGATCGCCCGCCGCTATGTCAACCGGGGCCTGTCGCTGCTCGATCTGATCGAGGAGGGGAATCTAGGCCTGATCC
GGGCAGTGGAGAAGTTCGATCCGGAACGCGGCTTCCGTTTCTCGACCTACGCCACCTGGTGGATTCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGCACCATTCGTCTGCCGATCCATGTGGTCAAGGAGCTCAATGTCTATCTACGGGCGGC
GCGTGAACTGACCCAGAAGCTCGATCACGAGCCTTCGGCGGAAGAGATCGCCAACCTGCTGGAAAAACCGGTCGCCGAGG
TCAAGCGCATGCTCGGACTCAACGAGCGGGTCACCTCGGTCGATGTCTCGCTGGGTCCGGATTCGGACAAGACCCTGCTC
GACGTGCTGACCGACGATCGCCCCTCCGATCCCTGTGACCTGCTGCAGGACGATGATTTGTCGCAGAGTATCGACCAGTG
GCTGTTCGACCTGACCGAGAAGCAGCGGGAAGTCGTGGTGCGTCGTTTCGGTCTGCGCGGCCACGAGAGTTGTACGCTGG
AGGAGGTGGGGCAGGAGATCGGCCTGACCCGCGAGCGGGTTCGCCAGATCCAGGTCGAGGCGCTCAAGCGTTTGCGGGAG
ATCCTCGAGAAGAATGGCCTTTCCAGCGATGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70 region 3 (Sigma70_r3) (179-253)

3D structure

• AlphaFold DB: C1DSR5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	63.205	100	0.638