Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DS740_RS17175 Genome accession   NZ_CP030937
Coordinates   3257935..3258579 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. DM2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3252935..3263579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS740_RS17140 (DS740_17140) - 3254127..3254558 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  DS740_RS17145 (DS740_17145) - 3254558..3254899 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  DS740_RS17150 (DS740_17150) - 3254892..3256373 (+) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  DS740_RS17155 (DS740_17155) - 3256379..3256855 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  DS740_RS17160 (DS740_17160) - 3256855..3257139 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  DS740_RS17165 (DS740_17165) mnhG 3257123..3257497 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  DS740_RS17170 (DS740_17170) - 3257536..3257916 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  DS740_RS17175 (DS740_17175) comA 3257935..3258579 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  DS740_RS17180 (DS740_17180) comP 3258660..3260960 (-) 2301 WP_088300729.1 histidine kinase Regulator
  DS740_RS17185 (DS740_17185) comX 3260972..3261136 (-) 165 WP_015384519.1 competence pheromone ComX -
  DS740_RS17190 (DS740_17190) - 3261149..3262009 (-) 861 WP_041850585.1 polyprenyl synthetase family protein -
  DS740_RS17195 (DS740_17195) degQ 3262193..3262333 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  DS740_RS23110 - 3262555..3262617 (+) 63 Protein_3334 hypothetical protein -
  DS740_RS17200 (DS740_17200) - 3262796..3263164 (+) 369 WP_041850584.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=302627 DS740_RS17175 WP_003220716.1 3257935..3258579(-) (comA) [Bacillus sp. DM2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=302627 DS740_RS17175 WP_003220716.1 3257935..3258579(-) (comA) [Bacillus sp. DM2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment