Detailed information NTG0302600

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: DS740_RS10495
• Genome accession: NZ_CP030937
• Coordinates: 2086458..2087588 (+)
• Length: 376 a.a.
• NCBI ID: WP_021481447.1
• Uniprot ID: -
• Organism: Bacillus sp. DM2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2085093..2091046	2086458..2087588	within	0

Gene organization within MGE regions

Location: 2085093..2091046

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DS740_RS10485 (DS740_10485)	-	2085093..2085467 (+)	375	WP_021481445.1	YoqO family protein	-
DS740_RS23255 (DS740_10490)	-	2086179..2086325 (+)	147	Protein_2011	phage holin	-
DS740_RS10495 (DS740_10495)	rapC	2086458..2087588 (+)	1131	WP_021481447.1	tetratricopeptide repeat protein	Regulator
DS740_RS22725	-	2087578..2087721 (+)	144	WP_153801665.1	hypothetical protein	-
DS740_RS23050 (DS740_10500)	-	2087875..2088075 (-)	201	WP_021481449.1	hypothetical protein	-
DS740_RS23055	-	2088297..2088671 (-)	375	Protein_2015	UV damage repair protein UvrX	-
DS740_RS10510 (DS740_10510)	-	2088669..2088824 (-)	156	Protein_2016	T7SS effector LXG polymorphic toxin	-
DS740_RS10515 (DS740_10515)	-	2088925..2089482 (-)	558	WP_038829958.1	SMI1/KNR4 family protein	-
DS740_RS10520 (DS740_10520)	-	2089610..2091046 (+)	1437	WP_120363441.1	flavin monoamine oxidase family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44393.16 Da
• Isoelectric Point: 5.8915

>NTDB_id=302600 DS740_RS10495 WP_021481447.1 2086458..2087588(+) (rapC) [Bacillus sp. DM2]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide

• Length: 1131 bp

>NTDB_id=302600 DS740_RS10495 WP_021481447.1 2086458..2087588(+) (rapC) [Bacillus sp. DM2]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (221-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	51.064	100	0.511
rapF	Bacillus subtilis subsp. subtilis str. 168	45.119	100	0.455