Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AVIN_RS16400 Genome accession   NC_012560
Coordinates   3671645..3672151 (-) Length   168 a.a.
NCBI ID   WP_012702130.1    Uniprot ID   C1DR93
Organism   Azotobacter vinelandii DJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3666645..3677151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVIN_RS16365 (Avin_35960) - 3666926..3667180 (-) 255 WP_012702122.1 hypothetical protein -
  AVIN_RS16370 (Avin_35970) parA 3667177..3667815 (-) 639 WP_012702123.1 ParA family partition ATPase -
  AVIN_RS16375 (Avin_35980) - 3668057..3668914 (-) 858 WP_187149014.1 replication initiator protein A -
  AVIN_RS16380 (Avin_35990) - 3668941..3669225 (-) 285 WP_041807335.1 AlpA family transcriptional regulator -
  AVIN_RS16385 (Avin_36000) - 3669337..3670119 (-) 783 WP_012702126.1 DUF2285 domain-containing protein -
  AVIN_RS16390 (Avin_36010) - 3670458..3670805 (-) 348 WP_041807337.1 DUF2958 domain-containing protein -
  AVIN_RS16395 (Avin_36020) - 3671091..3671384 (+) 294 WP_072432897.1 helix-turn-helix domain-containing protein -
  AVIN_RS27235 (Avin_36030) - 3671427..3671528 (-) 102 Protein_3301 DUF736 family protein -
  AVIN_RS16400 (Avin_36040) radC 3671645..3672151 (-) 507 WP_012702130.1 DNA repair protein RadC Machinery gene
  AVIN_RS25350 (Avin_36050) - 3672551..3674032 (-) 1482 WP_236616213.1 DNA cytosine methyltransferase -
  AVIN_RS25355 - 3674019..3674462 (-) 444 WP_072432898.1 very short patch repair endonuclease -
  AVIN_RS25360 (Avin_36070) - 3674474..3675817 (-) 1344 WP_012702133.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18482.18 Da        Isoelectric Point: 6.8517

>NTDB_id=30260 AVIN_RS16400 WP_012702130.1 3671645..3672151(-) (radC) [Azotobacter vinelandii DJ]
MSQLPLSLDTPLMVRDGRGRYRPADADQILEAARQVIEQKMQRGEAFASPSAVKDYLRAKLAGFEHEVFAVLFLDTRHRL
IDYVEMFHGTIDAAEVHPREVVKQALRVNAAAVIVSHNHPSGNPEPSGADRALTQQLKQVLALVDVRVLDHVIVAGAVAT
SFAERGLL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=30260 AVIN_RS16400 WP_012702130.1 3671645..3672151(-) (radC) [Azotobacter vinelandii DJ]
ATGTCGCAACTGCCCCTCTCTCTCGATACGCCGCTGATGGTGCGCGATGGCCGTGGCCGTTACCGGCCGGCCGACGCCGA
CCAGATTTTGGAAGCTGCGCGCCAGGTCATCGAACAGAAGATGCAGCGCGGCGAGGCATTCGCTTCGCCGTCGGCGGTGA
AGGACTACCTGCGCGCCAAGCTGGCCGGCTTCGAGCACGAAGTCTTCGCGGTACTGTTCCTCGATACGCGCCATCGCCTG
ATCGACTACGTGGAGATGTTCCACGGCACGATCGACGCCGCCGAGGTACATCCGCGCGAGGTGGTCAAACAGGCGCTGCG
GGTCAACGCGGCGGCGGTCATCGTCAGCCACAACCATCCGAGCGGGAACCCGGAGCCGAGCGGCGCCGACCGGGCACTGA
CCCAGCAGCTCAAGCAAGTGCTGGCGCTGGTGGATGTGCGCGTGTTGGATCACGTCATCGTCGCAGGCGCTGTTGCTACG
TCGTTCGCAGAGCGCGGTCTGCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DR93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

42.763

90.476

0.387

Multiple sequence alignment