Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EGCR1_RS13185 Genome accession   NZ_CP030932
Coordinates   2689742..2691115 (+) Length   457 a.a.
NCBI ID   WP_010782115.1    Uniprot ID   R2XG47
Organism   Enterococcus gilvus strain CR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2684742..2696115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGCR1_RS13165 (EGCR1_13170) - 2685083..2685829 (+) 747 WP_114525258.1 TIGR03915 family putative DNA repair protein -
  EGCR1_RS13170 (EGCR1_13175) - 2686006..2686962 (+) 957 WP_010782118.1 cation diffusion facilitator family transporter -
  EGCR1_RS13175 (EGCR1_13180) - 2687161..2688960 (+) 1800 WP_114525259.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  EGCR1_RS13180 (EGCR1_13185) - 2689208..2689714 (+) 507 WP_114525260.1 dUTP diphosphatase -
  EGCR1_RS13185 (EGCR1_13190) radA 2689742..2691115 (+) 1374 WP_010782115.1 DNA repair protein RadA Machinery gene
  EGCR1_RS13190 (EGCR1_13195) - 2691201..2692355 (+) 1155 WP_010782114.1 PIN/TRAM domain-containing protein -
  EGCR1_RS13195 (EGCR1_13200) gltX 2692453..2693910 (+) 1458 WP_114525261.1 glutamate--tRNA ligase -
  EGCR1_RS13200 (EGCR1_13205) epsC 2694755..2695288 (+) 534 WP_010782112.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49975.48 Da        Isoelectric Point: 7.7029

>NTDB_id=302534 EGCR1_RS13185 WP_010782115.1 2689742..2691115(+) (radA) [Enterococcus gilvus strain CR1]
MAKKSKTQFICQECGYVSPKYLGRCPSCGNWNTMVEEVEPNHPEDRRNRVSLTGERATPTKLKDVVFKKETRIQTELAEL
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSHQLAATGGNVLYVSGEESAQQIKLRAERLGSSDTDFYLYAETDMGEIS
RTIENLKPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGNIAGPRMLEHMVDTVLYF
EGEKHHSFRILRAVKNRFGSTNEIGIFEMRERGLVEVANPSQVFLEERLEGATGSAIVVAMEGSRPILVEVQALVTPTVF
GNAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAVAIAIASSYKENGTEATECFIGEIGLT
GEIRRVNSIEQRVKEAGKLGFKKIYLPKNNMGDWKPPKGIELIPVATLGETLRKVFR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=302534 EGCR1_RS13185 WP_010782115.1 2689742..2691115(+) (radA) [Enterococcus gilvus strain CR1]
TTGGCAAAAAAATCCAAGACACAATTTATCTGTCAGGAATGTGGGTATGTTTCGCCTAAATATTTAGGTCGGTGCCCGAG
TTGCGGCAATTGGAATACGATGGTGGAGGAAGTGGAACCCAATCACCCTGAAGACCGAAGAAATCGTGTCAGTCTAACGG
GAGAACGTGCGACTCCGACCAAGTTAAAAGATGTCGTCTTTAAAAAAGAAACGCGGATTCAAACAGAATTGGCAGAATTG
AATCGGGTTTTAGGCGGCGGCGTCGTTCCAGGGTCCTTGGTTTTGATCGGCGGAGATCCTGGGATCGGAAAGTCGACCTT
GCTGCTGCAAGTTTCGCATCAATTAGCGGCGACGGGGGGCAATGTGCTATACGTCTCGGGGGAAGAAAGCGCGCAGCAGA
TCAAGCTGCGGGCAGAACGCCTAGGGTCAAGCGACACGGATTTCTACCTGTATGCAGAGACAGACATGGGAGAAATCAGT
CGAACGATCGAGAATTTGAAGCCTGACTATGTAATCATCGACTCGATCCAAACCATGACCCAACCGGACATTACGAGTGT
GGCAGGCTCGGTCAGTCAGGTTCGTGAAACGACAGCCGAATTATTGAAGCTGGCGAAAACGAACGGGATCGCCATTTTTA
TCGTTGGTCACGTTACTAAAGAAGGAAATATCGCCGGTCCGCGTATGTTGGAGCATATGGTAGATACAGTGCTGTATTTC
GAAGGGGAGAAGCACCACAGCTTCCGTATCCTGCGAGCAGTCAAGAACCGTTTTGGCTCTACCAATGAGATCGGGATCTT
TGAAATGCGGGAGCGCGGCCTGGTGGAAGTCGCGAATCCCTCTCAAGTGTTCTTAGAGGAGCGTTTGGAGGGGGCGACTG
GATCAGCGATCGTTGTTGCGATGGAAGGCAGCCGGCCCATTTTGGTCGAAGTGCAGGCCTTAGTCACACCCACGGTTTTC
GGCAATGCCAAGCGAACGACGACGGGGCTGGATTTCAACCGCGTGTCGTTGATCATGGCTGTTTTAGAAAAACGTGCCGG
ACTGCTGCTGCAAAATCAGGATGCCTATTTGAAGGCAGCCGGCGGCGTAAAATTAAATGAGCCCGCGATCGATTTAGCGG
TAGCGATCGCCATTGCTTCCAGCTACAAAGAAAATGGAACGGAAGCGACAGAGTGCTTTATCGGCGAAATTGGTCTGACT
GGTGAGATTCGTCGGGTCAACAGCATCGAGCAGCGAGTAAAAGAAGCCGGCAAATTAGGATTCAAAAAAATCTATCTGCC
TAAAAATAATATGGGCGATTGGAAGCCGCCGAAAGGGATCGAATTGATTCCCGTGGCGACGCTAGGAGAAACATTAAGAA
AAGTATTCCGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

AAA domain (AAA_25)

(57-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R2XG47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.123

99.781

0.74
  radA Streptococcus mitis SK321

73.904

99.781

0.737
  radA Streptococcus pneumoniae Rx1

73.904

99.781

0.737
  radA Streptococcus pneumoniae D39

73.904

99.781

0.737
  radA Streptococcus pneumoniae R6

73.904

99.781

0.737
  radA Streptococcus pneumoniae TIGR4

73.904

99.781

0.737
  radA Bacillus subtilis subsp. subtilis str. 168

65.188

98.687

0.643

Multiple sequence alignment