Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EGCR1_RS08325 Genome accession   NZ_CP030932
Coordinates   1716962..1718632 (-) Length   556 a.a.
NCBI ID   WP_086303491.1    Uniprot ID   -
Organism   Enterococcus gilvus strain CR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1711962..1723632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGCR1_RS08295 (EGCR1_08300) - 1712077..1714266 (-) 2190 WP_114524709.1 penicillin-binding transpeptidase domain-containing protein -
  EGCR1_RS08300 (EGCR1_08305) ftsL 1714267..1714644 (-) 378 WP_114524710.1 cell division protein FtsL -
  EGCR1_RS08305 (EGCR1_08310) rsmH 1714650..1715603 (-) 954 WP_114524711.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  EGCR1_RS08310 (EGCR1_08315) mraZ 1715619..1716050 (-) 432 WP_010780217.1 division/cell wall cluster transcriptional repressor MraZ -
  EGCR1_RS08315 (EGCR1_08320) - 1716219..1716590 (-) 372 WP_010780216.1 DUF3397 domain-containing protein -
  EGCR1_RS08320 (EGCR1_08325) - 1716819..1716935 (+) 117 WP_010745911.1 DUF4044 domain-containing protein -
  EGCR1_RS08325 (EGCR1_08330) recN 1716962..1718632 (-) 1671 WP_086303491.1 DNA repair protein RecN Machinery gene
  EGCR1_RS08330 (EGCR1_08335) - 1718662..1719120 (-) 459 WP_086303490.1 arginine repressor -
  EGCR1_RS08335 (EGCR1_08340) - 1719136..1719951 (-) 816 WP_114524712.1 TlyA family RNA methyltransferase -
  EGCR1_RS08340 (EGCR1_08345) - 1719993..1720880 (-) 888 WP_114524713.1 polyprenyl synthetase family protein -
  EGCR1_RS08345 (EGCR1_08350) - 1720881..1721105 (-) 225 WP_010780211.1 exodeoxyribonuclease VII small subunit -
  EGCR1_RS08350 (EGCR1_08355) xseA 1721105..1722439 (-) 1335 WP_086303487.1 exodeoxyribonuclease VII large subunit -
  EGCR1_RS08355 (EGCR1_08360) - 1722455..1723312 (-) 858 WP_044926539.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62876.45 Da        Isoelectric Point: 4.6305

>NTDB_id=302522 EGCR1_RS08325 WP_086303491.1 1716962..1718632(-) (recN) [Enterococcus gilvus strain CR1]
MLQELTIKNFAIISSLHLGFTDGMTALTGETGAGKSIIIDAVSLLAGARSSIEYIRQGSEKCLIEGLFDLPKQNEFQLLM
EELGIEVDEAGLIVQRDLNVSGKSISRVNGRIVTLANLRRIGQFLVDIQGQNDHQELMHPESHLRLLDSFGDAAFQQIKL
TYQTAYRSYITLVNQVKKFKQNEQSFVQRIDMLTFQQEEIGNAELTVGEEEKLLEEREKLTNYQRIVDSLSNSYQAMTNE
ETSSLDAIGSASQELQTIASLDKEYENISDNVHSAYYLLQDAVSEIGRQLDLLELDEERLDLVNERLELIHQLKRKYGDS
IEHILKYYDQISQELLDSDFSGDKLEKLEKELIDKEEQLHEFAKTLQTARKSMAEKLEAEIQRELKDLYMENARFKVVFK
EISFVSDGIDEVEFYITTNPGEPLKPLVKVASGGEISRIMLALKTIFSKTQELTSIVFDEVDTGVSGRVAQAIADKIYQI
GKNSQALCITHLPQVAAKADHQLFIRKEIVGGRTVTKVEEMKEADRTEEIARMLAGTEITDLTVKHAKELLQLAKK

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=302522 EGCR1_RS08325 WP_086303491.1 1716962..1718632(-) (recN) [Enterococcus gilvus strain CR1]
ATGTTACAAGAATTGACAATCAAAAATTTTGCCATCATTTCTTCGTTGCACTTGGGTTTTACCGACGGCATGACAGCTTT
GACTGGTGAAACGGGTGCCGGAAAATCAATTATTATTGATGCCGTCAGCTTATTAGCGGGTGCCCGTTCATCCATCGAAT
ACATTCGACAAGGCAGCGAGAAATGTTTGATTGAAGGCCTCTTCGATTTACCAAAGCAGAATGAATTTCAGCTTCTCATG
GAAGAGTTAGGTATTGAGGTTGACGAAGCAGGGCTCATCGTTCAAAGAGACTTGAATGTCTCTGGAAAAAGCATCTCCCG
AGTCAATGGCAGGATCGTGACGCTAGCTAACTTACGACGAATTGGACAGTTTTTAGTTGATATTCAGGGGCAAAATGATC
ATCAGGAGCTTATGCATCCTGAATCCCATTTACGATTGCTGGATAGTTTTGGTGATGCTGCTTTTCAGCAAATTAAACTG
ACGTATCAAACGGCGTATCGAAGCTATATTACTTTGGTGAACCAAGTCAAAAAGTTTAAGCAAAACGAACAATCCTTTGT
CCAACGAATCGATATGTTGACGTTTCAACAAGAAGAGATCGGAAATGCAGAATTGACAGTTGGTGAAGAGGAGAAGCTGC
TTGAAGAACGTGAGAAGCTGACGAACTACCAACGAATCGTCGACAGTCTTTCGAACAGCTATCAAGCGATGACGAACGAG
GAAACGAGTTCTCTTGATGCGATTGGGTCAGCGAGTCAAGAACTGCAAACAATTGCTTCTCTAGATAAAGAGTACGAAAA
TATCTCAGACAATGTTCATAGCGCATATTATTTGCTGCAAGACGCTGTTAGTGAGATAGGGCGTCAGTTGGATCTTTTGG
AGTTAGATGAAGAGCGACTGGATTTAGTCAATGAGCGTTTAGAATTGATCCATCAATTAAAAAGAAAATATGGCGATTCG
ATCGAGCATATTTTGAAATACTATGATCAAATCAGTCAAGAATTACTAGACTCTGATTTTTCCGGAGACAAGCTTGAAAA
GCTTGAGAAGGAGCTAATCGACAAAGAGGAGCAGCTTCACGAATTCGCGAAGACGCTGCAAACTGCTCGAAAAAGTATGG
CGGAGAAGTTAGAAGCAGAAATTCAACGAGAGTTGAAAGATCTTTATATGGAAAACGCCCGATTTAAAGTAGTATTTAAG
GAAATTTCTTTTGTATCAGATGGTATAGATGAAGTAGAATTTTATATTACGACCAATCCTGGGGAACCCCTGAAGCCTTT
AGTTAAGGTAGCATCCGGCGGAGAGATCTCTCGGATCATGTTGGCATTAAAAACCATTTTTTCAAAAACGCAAGAGCTGA
CGAGTATCGTCTTTGATGAAGTTGACACAGGAGTGAGTGGTCGTGTCGCACAAGCAATTGCAGATAAAATTTATCAAATC
GGAAAGAATTCTCAGGCGCTCTGCATCACGCACCTTCCTCAAGTAGCTGCAAAAGCAGATCATCAACTATTTATTCGCAA
AGAAATCGTTGGCGGTCGGACAGTGACGAAGGTGGAAGAAATGAAGGAAGCAGATCGGACAGAAGAGATCGCGCGAATGC
TTGCTGGAACCGAAATTACCGATCTAACGGTGAAGCATGCCAAAGAATTATTGCAATTAGCAAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.895

100

0.491

Multiple sequence alignment